Published Papers

@article{JetHubRamVen26, author = {Jethwa, P. and Hubmer, S. and Ramlau, R. and Van de Ven, G.}, title = {3D full-spectrum fitting: Algorithm comparison}, doi = {10.1051/0004-6361/202557989}, journal = {Astronom. and Astrophys.}, fjournal = {Astronomy {\&} Astrophysics}, pages = {A135}, pdf = {https://www.aanda.org/articles/aa/pdf/2026/06/aa57989-25.pdf}, volume = {710}, year = {2026}, }

@article{SheHub26, author = {Sherina, E. and Hubmer, S.}, title = {On the Intensity-based Inversion Method for Quantitative Quasi-Static Elastography}, doi = {10.1088/1361-6420/ae5084}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ae5084/pdf}, volume = {42}, year = {2026}, }

@article{WeiHubStaRam26, author = {Weissinger, L. and Hubmer, S. and Stadler, B. and Ramlau, R.}, title = {Singular value-based atmospheric tomography with Fourier domain regularization}, doi = {10.1117/1.jatis.12.2.029001}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {2}, volume = {12}, year = {2026}, }

@article{BreBigLanSelAmb25, author = {Breger, A. and Biguri, A. and Landman, M.~S. and Selby, I. and Amberg, N. and Brunner, E. and Gr{\"o}hl, J. and Hatamikia, S. and Karner, C. and Ning, L. and Dittmer, S. and Roberts, M. and Sch{\"o}nlieb, C.-B.}, title = {A Study of Why We Need to Reassess Full Reference Image Quality Assessment with Medical Images}, doi = {10.1007/s10278-025-01462-1}, journal = {J. Imaging. Inform. Med.}, fjournal = {Journal of Imaging Informatics in Medicine}, number = {6}, pages = {3444--3469}, pdf = {https://link.springer.com/content/pdf/10.1007/s10278-025-01462-1.pdf}, volume = {38}, year = {2025}, }

@article{RanHubHamRam25b, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {A practical guide to optimizing industrial thermal spraying through comparative multi-objective optimization}, doi = {10.1186/s13362-025-00177-w}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-025-00177-w.pdf}, volume = {15}, year = {2025}, }

@article{WalSte25, author = {Wald, Ch. and Steidl, G.}, title = {A study of particle motion in the presence of clusters}, doi = {10.1080/03610918.2025.2450706}, journal = {Commun. Stat. Simul. Comput.}, fjournal = {Communications in Statistics - Simulation and Computation}, number = {5}, pages = {1566--1576}, pdf = {https://www.tandfonline.com/doi/epdf/10.1080/03610918.2025.2450706?needAccess=true}, volume = {55}, year = {2025}, }

@article{WeiHubRamVos25, author = {Weissinger, L. and Hubmer, S. and Ramlau, R. and Voss, H.~U.}, title = {An Inverse Problems Approach to Pulse Wave Analysis in the Human Brain}, doi = {10.1137/24m163921x}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {1}, pages = {60--88}, volume = {18}, year = {2025}, }

@article{AspSch25, author = {Aspri, A. and Scherzer, O.}, title = {Analysis of generalized iteratively regularized Landweber iterations driven by data}, address = {Berlin, Boston}, booktitle = {Data-driven Models in Inverse Problems}, doi = {10.1515/9783111251233-008}, editor = {Bubba, T.~A.}, pages = {273--302}, publisher = {De Gruyter}, year = {2025}, }

@article{FriSchShi25, author = {Frischauf, L. and Scherzer, O. and Shi, C.}, title = {Classification with neural networks with quadratic decision functions}, address = {Berlin, Boston}, booktitle = {Data-driven Models in Inverse Problems}, doi = {10.1515/9783111251233-014}, editor = {Bubba, T.~A. }, pages = {471--494}, publisher = {De Gruyter}, year = {2025}, }

@article{FosKitSch25, author = {Foschiatti, S. and Kittenberger, A. and Scherzer, O.}, title = {Deciphering Scrolls with Tomography: A Training Experiment}, doi = {10.1090/noti3248}, journal = {Notices Amer. Math. Soc.}, fjournal = {Notices of the American Mathematical Society}, number = {10}, pages = {1146--1155}, pdf = {https://www.ams.org/journals/notices/202510/rnoti-p1146.pdf}, volume = {72}, year = {2025}, }

@inproceedings{HerJahQue25, author = {Hertrich, J. and Jahn, T. and Quellmalz, M.}, title = {Fast Summation of Radial Kernels via {QMC} Slicing}, booktitle = {The Thirteenth International Conference on Learning Representations ({ICLR})}, pdf = {https://openreview.net/pdf?id=iNmVX9lx9l}, url = {https://openreview.net/forum?id=iNmVX9lx9l}, year = {2025}, }

@article{KirQueSet25, author = {Kirisits, C. and Quellmalz, M. and Setterqvist, E.}, title = {Generalized Fourier Diffraction Theorem and Filtered Backpropagation for Tomographic Reconstruction}, doi = {10.1137/24M167370X}, issue = {1}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, pages = {665--700}, volume = {18}, year = {2025}, }

@article{BruKunDrePolPir25, author = {Brunner, E. and Kunze, L. and Drexler, W. and Pollreisz, A. and Pircher, M.}, title = {Image Quality in Adaptive Optics Optical Coherence Tomography of Diabetic Patients}, doi = {10.3390/diagnostics15040429}, journal = {Diagnostics}, fjournal = {Diagnostics}, number = {4}, pages = {429}, pdf = {https://www.mdpi.com/2075-4418/15/4/429/pdf?version=1739348018}, volume = {15}, year = {2025}, }

@article{RanHubHamRam25, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {Leveraging real-time data analysis and multiple kernel learning for manufacturing of innovative steels}, doi = {10.1186/s13362-025-00175-y}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-025-00175-y.pdf}, volume = {15}, year = {2025}, }

@inproceedings{CheWalDuoSte25, author = {Chemseddine, J. and Wald, Ch. and Duong, R. and Steidl, G.}, title = {Neural Sampling from Boltzmann Densities: Fisher-Rao Curves in the Wasserstein Geometry}, booktitle = {The Thirteenth International Conference on Learning Representations}, pdf = {https://openreview.net/pdf?id=TUvg5uwdeG}, url = {https://openreview.net/forum?id=TUvg5uwdeG}, year = {2025}, }

@article{KinHub25, author = {Kindermann, S. and Hubmer, S.}, title = {Norms in sinogram space and stability estimates for the Radon transform}, doi = {10.1088/1361-6420/adab13}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {2}, pages = {025008}, volume = {41}, year = {2025}, }

@article{HubLaiRamSheSta25, author = {Hubmer, S. and Laidlaw, V. and Ramlau, R. and Sherina, E. and Stadler, B.}, title = {On Phase Unwrapping via Digital Wavefront Sensors}, doi = {10.1137/24M1680994}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {2}, pages = {1260--1283}, volume = {18}, year = {2025}, }

@article{GfrHubRam25, author = {Gfrerer, H. and Hubmer, S. and Ramlau, R.}, title = {On SCD Semismooth* Newton methods for the efficient minimization of Tikhonov functionals with non-smooth and non-convex penalties}, doi = {10.1088/1361-6420/ade181}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {7}, pages = {075002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ade181/pdf}, volume = {41}, year = {2025}, }

@article{HamRanHubRam25, author = {Hambrock, C. and Rannetbauer, W. and Hubmer, S. and Ramlau, R.}, title = {Predicting Interaction Phenomena in HVOF Thermal Spraying of WC-CoCr: A Hybrid Experimental--Statistical Approach}, doi = {10.1007/s11666-025-02043-y}, journal = {J. Therm. Spray Technol.}, fjournal = {Journal of Thermal Spray Technology}, number = {6}, pages = {2145--2157}, pdf = {https://link.springer.com/content/pdf/10.1007/s11666-025-02043-y.pdf}, volume = {34}, year = {2025}, }

@article{AspFriSch25, author = {Aspri, A. and Frischauf, L. and Scherzer, O.}, title = {Spectral function space learning and numerical linear algebra networks for solving linear inverse problems}, doi = {10.1553/etna_vol64s23}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {23--44}, pdf = {https://epub.oeaw.ac.at/0xc1aa5572_0x0040f3fd.pdf}, volume = {64}, year = {2025}, }

@article{FosGabSin25, author = {Foschiatti, S. and Gaburro, R. and Sincich, E.}, title = {The Local Complex Calder{\'o}n Problem: Stability in a Layered Medium for a Special Type of Anisotropic Admittivity}, doi = {10.1137/24M1682762}, journal = {{SIAM} J. Math. Anal.}, fjournal = {{SIAM} Journal on Mathematical Analysis}, number = {4}, pages = {4396--4424}, volume = {57}, year = {2025}, }

@incollection{KirRaiSchStrYan25, author = {Kirisits , C. and Raik, K. and Scherzer, O. and Strohmenger, C.~U. and Yan, J.}, title = {Using the transport of intensity and the transport of phase equation for phase retrieval}, booktitle = {Inverse Problems on Large Scales. Mathematical Modelling and Computational Methods}, doi = {10.1515/9783111357270-004}, editor = {Mejri , B. and Ramlau, R. and Scherzer, O.}, pages = {53–68}, publisher = {De Gruyter}, series = {Radon Series on Computational and Applied Mathematics}, volume = {32}, year = {2025}, }

@article{GanMejSch25, author = {Gangl, P. and Mejri, B. and Scherzer, O.}, title = {Vertex Characterization Via Second-Order Topological Derivatives}, doi = {10.1007/s10851-025-01269-3}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, number = {5}, volume = {67}, year = {2025}, }

@article{RanHamHubRam25, author = {Rannetbauer, W. and Hambrock, C. and Hubmer, S. and Ramlau, R.}, title = {Virtual Sensors and Thermal Modelling for Quality Control in Industrial Thermal Spraying}, doi = {10.1016/j.procs.2025.01.266}, journal = {Procedia Comput. Sci.}, fjournal = {Procedia Computer Science}, pages = {2049--2062}, pdf = {https://www.sciencedirect.com/science/article/pii/S1877050925002741/pdf?md5=42a9be8a43e60ecd6b72a712fbe8f6f0&pid=1-s2.0-S1877050925002741-main.pdf}, volume = {253}, year = {2025}, }

@incollection{WeiHubStaRam24, author = {Weissinger, L. and Hubmer, S. and Stadler, B. and Ramlau, R.}, title = {8 Singular value and frame decomposition-based reconstruction for atmospheric tomography}, booktitle = {Inverse Problems on Large Scales}, doi = {10.1515/9783111357270-008}, pages = {151--180}, year = {2024}, }

@article{MejSch24, author = {Mejri, B. and Scherzer, O.}, title = {An Inversion Scheme for Elastic Diffraction Tomography Based on Mode Separation}, doi = {10.1137/22M1538909}, journal = {{SIAM} J. Appl. Math.}, fjournal = {{SIAM} Journal on Applied Mathematics}, month = feb, number = {1}, pages = {165--188}, volume = {84}, year = {2024}, }

@article{DonSadSchScho24, author = {Dong, Y. and Sadiq, K. and Scherzer, O. and Schotland, J.~C.}, title = {Computational inverse scattering with internal sources: A reproducing kernel Hilbert space approach}, doi = {10.1103/PhysRevE.110.065302}, journal = {Phys. Rev. E}, fjournal = {Physical Review E}, month = 12, number = {6}, pages = {065302}, url = {https://link.aps.org/doi/10.1103/PhysRevE.110.065302}, volume = {110}, year = {2024}, }

@article{KirNauSchYan24, author = {Kirisits, C. and Naujoks, N. and Scherzer, O. and Yang, H.}, title = {Diffraction tomography for incident Herglotz waves}, doi = {10.1088/1361-6420/ad7d2d}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {11}, pages = {115007}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad7d2d/pdf}, volume = {40}, year = {2024}, }

@article{RanHamHubRam24, author = {Rannetbauer, W. and Hambrock, C. and Hubmer, S. and Ramlau, R.}, title = {Enhancing Predictive Quality in HVOF Coating Technology: A Comparative Analysis of Machine Learning Techniques}, doi = {10.1016/j.procs.2024.01.136}, journal = {Procedia Comput. Sci.}, fjournal = {Procedia Computer Science}, pages = {1377--1387}, pdf = {https://www.sciencedirect.com/science/article/pii/S1877050924001364}, volume = {232}, year = {2024}, }

@inproceedings{HerWalAltHag24, author = {Hertrich, J. and Wald, Ch. and Altekr{\"u}ger, F. and Hagemann, P.}, title = {Generative Sliced {MMD} Flows with Riesz Kernels}, booktitle = {The Twelfth International Conference on Learning Representations}, url = {https://openreview.net/forum?id=VdkGRV1vcf}, year = {2024}, }

@article{BruKunLaiJodDre24, author = {Brunner, E. and Kunze, L. and Laidlaw, V. and Jodlbauer, D. and Drexler, W. and Ramlau, R. and Pollreisz, A. and Pircher, M.}, title = {Improvements on speed, stability and field of view in adaptive optics OCT for anterior retinal imaging using a pyramid wavefront sensor}, doi = {10.1364/boe.533451}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {10}, pages = {6098}, pdf = {https://opg.optica.org/directpdfaccess/cc51c6fd-eff2-471e-8a06498acd127607_560947/boe-15-10-6098.pdf}, volume = {15}, year = {2024}, }

@article{SchnHinJesSchu24, author = {Schneider, M.~C. and Hinterer, F. and Jesacher, A. and Sch{\"u}tz, G.~J.}, title = {Interactive simulation and visualization of point spread functions in single molecule imaging}, doi = {10.1016/j.optcom.2024.130463}, journal = {Opt. Commun.}, fjournal = {Optics Communications}, pages = {130463}, pdf = {https://www.sciencedirect.com/science/article/pii/S0030401824002001}, volume = {560}, year = {2024}, }

@article{QueElbSchSte24, author = {Quellmalz, M. and Elbau, P. and Scherzer, O. and Steidl, G.}, title = {Motion Detection in Diffraction Tomography by Common Circle Methods}, doi = {10.1090/mcom/3869}, journal = {Math. Comp.}, fjournal = {Mathematics of Computation}, pages = {747--784}, volume = {93}, year = {2024}, }

@article{QueBueSte24, author = {Quellmalz, M. and Buecher, L. and Steidl, G.}, title = {Parallelly Sliced Optimal Transport on Spheres and on the Rotation Group}, doi = {10.1007/s10851-024-01206-w}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, number = {6}, pages = {951--976}, pdf = {https://link.springer.com/content/pdf/10.1007/s10851-024-01206-w.pdf}, volume = {66}, year = {2024}, }

@article{RanHubHamRam24, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {Predictive modelling of critical variables for improving HVOF coating using gamma regression models}, doi = {10.1186/s13362-024-00146-9}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-024-00146-9.pdf}, volume = {14}, year = {2024}, }

@article{FriSchShi24, author = {Frischauf, L. and Scherzer, O. and Shi, C.}, title = {Quadratic Neural Networks for Solving Inverse Problems}, doi = {10.1080/01630563.2024.2316580}, issue = {2}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, pages = {112--135}, pdf = {https://www.tandfonline.com/doi/epdf/10.1080/01630563.2024.2316580}, year = {2024}, }

@article{VesElbMinKraDre24, author = {Veselka, L. and Elbau, P. and Mindrinos, L. and Krainz, L. and Drexler, W.}, title = {Quantitative parameter reconstruction from optical coherence tomographic data}, doi = {10.1088/1361-6420/ad0fab}, eid = {025001}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {2}, pages = {025001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad0fab/pdf}, volume = {40}, year = {2024}, }

@article{LiHubLuRam24, author = {Li, X. and Hubmer, S. and Lu, S. and Ramlau, R.}, title = {Regularization of Linear Inverse Problems with Irregular Noise Using Embedding Operators}, doi = {10.1137/24m1636307}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {2053--2075}, volume = {17}, year = {2024}, }

@article{AntMelWalSte24, author = {Antarou Ba, F. and Melnyk, O. and Wald, Ch. and Steidl, G.}, title = {Sparse additive function decompositions facing basis transforms}, doi = {10.3934/fods.2024025}, journal = {Found. Data Sci.}, fjournal = {Foundations of Data Science}, number = {4}, pages = {514--552}, volume = {6}, year = {2024}, }

@article{MelQueSteJaiJor24, author = {Melnyk, O. and Quellmalz, M. and Steidl, G. and Jaitner, N. and Jordan, J. and Sack, I.}, title = {Time-harmonic optical flow with applications in elastography}, doi = {10.1088/1361-6420/ad9776}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {125026}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad9776/pdf}, volume = {40}, year = {2024}, }

@article{KvaDenMosLeiDre24, author = {Kv{\aa}le L{\o}vmo, M. and Deng, S. and Moser, S. and Leitgeb, R. and Drexler, W. and Ritsch-Marte, M.}, title = {Ultrasound-induced reorientation for multi-angle optical coherence tomography}, doi = {10.1038/s41467-024-46506-2}, journal = {Nat. Commun.}, fjournal = {Nature Communications}, number = {1}, pdf = {https://www.nature.com/articles/s41467-024-46506-2.pdf}, volume = {15}, year = {2024}, }

@article{ParKirSch24, author = {Parzer, F. and Kirisits, C. and Scherzer, O.}, title = {Uncertainty Quantification for Scale-Space Blob Detection}, doi = {10.1007/s10851-024-01194-x}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, pages = {697--717}, pdf = {https://link.springer.com/content/pdf/10.1007/s10851-024-01194-x.pdf}, volume = {66}, year = {2024}, }

@incollection{QueWeiHubErc23, author = {Quellmalz, M. and Weissinger, L. and Hubmer, S. and Erchinger, P.~D.}, title = {A Frame Decomposition of the Funk-Radon Transform}, booktitle = {Lecture Notes in Computer Science}, doi = {10.1007/978-3-031-31975-4_4}, pages = {42--54}, year = {2023}, }

@article{HinHubJetSooVen23, author = {Hinterer, F. and Hubmer, S. and Jethwa, P. and Soodhalter, K.~M. and van de Ven, G. and Ramlau, R.}, title = {A Projected Nesterov--Kaczmarz Approach to Stellar Population-Kinematic Distribution Reconstruction in Extragalactic Archaeology}, doi = {10.1137/22m1503002}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {1}, pages = {192--222}, volume = {16}, year = {2023}, }

@article{MilQue23, author = {Mildenberger, S. and Quellmalz, M.}, title = {A double Fourier sphere method for d-dimensional manifolds}, doi = {10.1007/s43670-023-00064-8}, journal = {Sampl. Theory Signal Process. Data Anal.}, fjournal = {Sampling Theory, Signal Processing, and Data Analysis}, number = {2}, pdf = {https://link.springer.com/content/pdf/10.1007/s43670-023-00064-8.pdf}, volume = {21}, year = {2023}, }

@article{GinGioMin23, author = {Gintides, D. and Giogiakas, S. and Mindrinos, L.}, title = {A theoretical and numerical study of oblique scattering by an inhomogeneous cylinder}, doi = {10.1088/1742-6596/2444/1/012009}, journal = {J. Phys. Conf. Ser.}, fjournal = {Journal of Physics: Conference Series}, number = {1}, pages = {012009}, pdf = {https://iopscience.iop.org/article/10.1088/1742-6596/2444/1/012009/pdf}, volume = {2444}, year = {2023}, }

@article{OmoSad23a, author = {Omogbhe, D. and Sadiq, K.}, title = {An inverse source problem for linearly anisotropic radiative sources in absorbing and scattering medium}, doi = {10.1080/00036811.2023.2234387}, journal = {Appl. Anal.}, fjournal = {Applicable Analysis}, pages = {1--16}, pdf = {https://www.tandfonline.com/doi/epdf/10.1080/00036811.2023.2234387?needAccess=true}, year = {2023}, }

@article{HubSheRam23, author = {Hubmer, S. and Sherina, E. and Ramlau, R.}, title = {Characterizations of adjoint Sobolev embedding operators with applications in inverse problems}, doi = {10.1553/etna_vol59s116}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {116--144}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003e6cc3.pdf}, volume = {59}, year = {2023}, }

@article{ElbMinVes23, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Development of mathematical models for quantitative OCT: A review}, doi = {10.3934/math.2023130}, issuetitle = {Mathematical modeling and optimal control of complex systems, complex networks and multi-scale models}, journal = {AIMS Mathematics}, fjournal = {AIMS Mathematics}, number = {2}, pages = {2508-2531}, pdf = {https://www.aimspress.com/article/doi/10.3934/math.2023130}, volume = {8}, year = {2023}, }

@article{SchHofNas23, author = {Scherzer, O. and Hofmann, B. and Nashed, Z.}, title = {Gauss{\textendash}Newton method for solving linear inverse problems with neural network coders}, doi = {10.1007/s43670-023-00066-6}, journal = {Sampl. Theory Signal Process. Data Anal.}, fjournal = {Sampling Theory, Signal Processing, and Data Analysis}, number = {2}, pdf = {https://link.springer.com/content/pdf/10.1007/s43670-023-00066-6.pdf}, volume = {21}, year = {2023}, }

@article{HinSchnHubLopRam23, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Mart{\'i}nez, M. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Localization of fixed dipoles at high precision by accounting for sample drift during illumination}, doi = {10.1063/5.0137834}, journal = {Appl. Phys. Lett.}, fjournal = {Applied Physics Letters}, number = {2}, pdf = {https://pubs.aip.org/aip/apl/article-pdf/doi/10.1063/5.0137834/18042148/023703_1_5.0137834.pdf}, volume = {123}, year = {2023}, }

@article{OmoSad23, author = {Omogbhe, D. and Sadiq, K.}, title = {On the $X$-ray transform of planar symmetric tensors}, doi = {10.1515/jiip-2022-0055}, journal = {J. Inverse Ill-Posed Probl.}, fjournal = {Journal of Inverse and Ill-Posed Problems}, year = {2023}, }

@article{SadTam23, author = {Sadiq, K. and Tamasan, A.}, title = {On the range of the $X$-ray transform of symmetric tensors compactly supported in the plane}, doi = {10.3934/ipi.2022070}, journal = {Inverse Probl. Imaging}, fjournal = {Inverse Problems {\&} Imaging}, number = {3}, pages = {660--685}, pdf = {https://www.aimsciences.org//article/doi/10.3934/ipi.2022070}, volume = {17}, year = {2023}, }

@article{FauSch23, author = {Faucher, F. and Scherzer, O.}, title = {Quantitative inverse problem in visco-acoustic media under attenuation model uncertainty}, doi = {10.1016/j.jcp.2022.111685}, journal = {J. Comput. Phys.}, fjournal = {Journal of Computational Physics}, month = jan, pages = {111685}, pdf = {https://www.sciencedirect.com/science/article/pii/S0021999122007483/pdfft?md5=89a23717cccf53e69bee4beb80934dfe&pid=1-s2.0-S0021999122007483-main.pdf}, volume = {472}, year = {2023}, }

@inproceedings{SchmElbQueRitSch23, author = {Schmutz, D. and Elbau, P. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Steidl, G.}, title = {Rigid Motion Reconstruction in Parallel Beam and Diffraction Tomography}, booktitle = {Oberwolfach Reports: Tomographic Inverse Problems - Mathematical Challenges and Novel Applications}, number = {21}, pages = {41--43}, pdf = {https://publications.mfo.de/bitstream/handle/mfo/4061/OWR_2023_21.pdf}, publisher = {Mathematisches Forschungsinstitut Oberwolfach}, url = {https://publications.mfo.de/handle/mfo/4061}, year = {2023}, }

@article{QueBeiSte23, author = {Quellmalz, M. and Beinert, R. and Steidl, G.}, title = {Sliced optimal transport on the sphere}, doi = {10.1088/1361-6420/acf156}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {10}, pages = {105005}, volume = {39}, year = {2023}, }

@article{HubSheRamPirLei23, author = {Hubmer, S. and Sherina, E. and Ramlau, R. and Pircher, M. and Leitgeb, R.}, title = {Subaperture-Based Digital Aberration Correction for Optical Coherence Tomography: A Novel Mathematical Approach}, doi = {10.1137/22m1543240}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1857-1885}, volume = {16}, year = {2023}, }

@article{FauSch23b, author = {Faucher, F. and Scherzer, O.}, title = {Synthetic dataset for visco-acoustic imaging}, doi = {10.1016/j.dib.2023.109199}, journal = {Data Br.}, fjournal = {Data in Brief}, pages = {109199}, pdf = {https://www.sciencedirect.com/science/article/pii/S2352340923003189/pdfft?md5=671cb00da25697e4b248a24b6fbef5e0&pid=1-s2.0-S2352340923003189-main.pdf}, volume = {48}, year = {2023}, }

@article{BeiQue23, author = {Beinert, R. and Quellmalz, M.}, title = {Total Variation‐Based Reconstruction and Phase Retrieval for Diffraction Tomography with an Arbitrarily Moving Object}, doi = {10.1002/pamm.202200135}, journal = {Proc. Appl. Math. Mech.}, fjournal = {Proceedings in Applied Mathematics and Mechanics}, number = {1}, pdf = {https://onlinelibrary.wiley.com/doi/epdf/10.1002/pamm.202200135}, volume = {22}, year = {2023}, }

@article{ParJetBoeAlfSch23, author = {Parzer, F. and Jethwa, P. and Boecker, A. and Alfaro-Cuello, M. and Scherzer, O. and van de Ven, G.}, title = {Uncertainty-aware blob detection with an application to integrated-light stellar population recoveries}, doi = {10.1051/0004-6361/202244739}, journal = {Astronom. and Astrophys.}, fjournal = {Astronomy {\&} Astrophysics}, pdf = {https://www.aanda.org/articles/aa/pdf/forth/aa44739-22.pdf}, year = {2023}, }

@article{HubPloRamFosFra21, author = {Hubmer, S. and Ploier, A. and Ramlau, R. and Fosodeder, P. and van Frank, S.}, title = {A mathematical approach towards {THz} tomography for non-destructive imaging}, doi = {10.3934/ipi.2021041}, journal = {Inverse Probl. Imaging}, fjournal = {Inverse Problems {\&} Imaging}, number = {1}, pages = {68--88}, pdf = {https://www.aimsciences.org/article/doi/10.3934/ipi.2021041#FullText}, volume = {16}, year = {2022}, }

@article{HubSheKinRai22, author = {Hubmer, S. and Sherina, E. and Kindermann, S. and Raik, K.}, title = {A numerical comparison of some heuristic stopping rules for nonlinear Landweber iteration}, doi = {10.1553/etna_vol57s216}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {216--241}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003dd6da.pdf}, url = {https://doi.org/10.1553/etna_vol57s216}, volume = {57}, year = {2022}, }

@article{BaQue22, author = {Ba, F.~A. and Quellmalz, M.}, title = {Accelerating the Sinkhorn Algorithm for Sparse Multi-Marginal Optimal Transport via Fast Fourier Transforms}, doi = {10.3390/a15090311}, journal = {Algorithms}, fjournal = {Algorithms}, number = {9}, pages = {311}, pdf = {https://page.math.tu-berlin.de/~quellm/paper/algorithms-15-00311.pdf}, volume = {15}, year = {2022}, }

@article{LovMosThaRit22, author = {L{\o}vmo, M.~K. and Moser, S. and Thalhammer-Thurner, G. and Ritsch-Marte, M.}, title = {Acoustofluidic trapping device for high-NA multi-angle imaging}, doi = {10.3389/fphy.2022.940115}, journal = {Front. Phys.}, fjournal = {Frontiers in Physics}, pdf = {https://www.frontiersin.org/articles/10.3389/fphy.2022.940115/pdf}, volume = {10}, year = {2022}, }

@article{KitMinSch22, author = {Kittenberger, A. and Mindrinos, L. and Scherzer, O.}, title = {Computed Origami Tomography}, doi = {10.1137/20M1378247}, journal = {{SIAM} Rev.}, fjournal = {{SIAM} Review}, number = {2}, pages = {469--484}, url = {https://epubs.siam.org/doi/10.1137/20M1378247}, volume = {64}, year = {2022}, }

@article{BotDonElbSch22, author = {Boţ, R. and Dong, G. and Elbau, P. and Scherzer, O.}, title = {Convergence Rates of First and Higher Order Dynamics for Solving Linear Ill-posed Problems}, doi = {10.1007/s10208-021-09536-6}, journal = {Found. Comput. Math.}, fjournal = {Foundations of Computational Mathematics}, pages = {1567--1629}, pdf = {https://link.springer.com/content/pdf/10.1007/s10208-021-09536-6.pdf}, volume = {22}, year = {2022}, }

@incollection{FauKirQueSchSet22a, author = {Faucher, F. and Kirisits, C. and Quellmalz, M. and Scherzer, O. and Setterqvist, E.}, title = {Diffraction Tomography, Fourier Reconstruction, and Full Waveform Inversion}, booktitle = {Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging}, doi = {10.1007/978-3-030-03009-4_115-1}, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-03009-4_115-1}, year = {2022}, }

@article{FriMelSch22, author = {Frischauf, L. and Melching, M. and Scherzer, O.}, title = {Diffusion tensor regularization with metric double integrals}, doi = {10.1515/jiip-2021-0041}, journal = {J. Inverse Ill-Posed Probl.}, fjournal = {Journal of Inverse and Ill-Posed Problems}, number = {2}, pages = {163--190}, pdf = {https://www.degruyter.com/document/doi/10.1515/jiip-2021-0041/pdf}, volume = {30}, year = {2022}, }

@article{WagSaxRamHub22, author = {Wagner, R. and Saxenhuber, D. and Ramlau, R. and Hubmer, S.}, title = {Direction dependent point spread function reconstruction for multi-conjugate adaptive optics on giant segmented mirror telescopes}, doi = {10.1016/j.ascom.2022.100590}, journal = {Astron. Comput.}, fjournal = {Astronomy and Computing}, pages = {100590}, pdf = {https://www.sciencedirect.com/science/article/pii/S2213133722000270/pdfft?md5=dac29f8b4ff2f349b7796dbdac3d4517}, volume = {40}, year = {2022}, }

@article{SchnSchu22, author = {Schneider, M.~C. and Sch{\"u}tz, G.~J.}, title = {Don't Be Fooled by Randomness: Valid p-Values for Single Molecule Microscopy}, doi = {10.3389/fbinf.2022.811053}, journal = {Front. Bioinform.}, fjournal = {Frontiers in Bioinformatics}, pdf = {https://www.frontiersin.org/articles/10.3389/fbinf.2022.811053/full}, volume = {2}, year = {2022}, }

@article{ParSch22, author = {Parzer, F. and Scherzer, O.}, title = {On convergence rates of adaptive ensemble Kalman inversion for linear ill-posed problems}, doi = {10.1007/s00211-022-01314-y}, journal = {Numer. Math.}, fjournal = {Numerische Mathematik}, pdf = {https://link.springer.com/content/pdf/10.1007/s00211-022-01314-y.pdf}, url = {https://link.springer.com/article/10.1007/s00211-022-01314-y}, year = {2022}, }

@article{HubRamWei22, author = {Hubmer, S. and Ramlau, R. and Weissinger, L.}, title = {On regularization via frame decompositions with applications in tomography}, doi = {10.1088/1361-6420/ac5b86}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ac5b86/pdf}, volume = {38}, year = {2022}, }

@article{ChaMin22, author = {Chapko, R. and Mindrinos, L.}, title = {On the Numerical Solution of a Hyperbolic Inverse Boundary Value Problem in Bounded Domains}, doi = {10.3390/math10050750}, issue = {5}, journal = {Math.}, fjournal = {Mathematics}, pages = {750}, url = {https://www.mdpi.com/2227-7390/10/5/750}, volume = {10}, year = {2022}, }

@article{StaRam22, author = {Stadler, B. and Ramlau, R.}, title = {Performance of an iterative wavelet reconstructor for the Multi-conjugate Adaptive Optics RelaY of the Extremely Large Telescope}, doi = {10.1117/1.jatis.8.2.021503}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {2}, volume = {8}, year = {2022}, }

@article{KraSheHubLiuDre22, author = {Krainz, L. and Sherina, E. and Hubmer, S. and Liu, M. and Drexler, W. and Scherzer, O.}, title = {Quantitative Optical Coherence Elastography: A Novel Intensity-Based Inversion Method Versus Strain-Based Reconstructions}, doi = {10.1109/jstqe.2022.3225108}, journal = {{IEEE} J. Sel. Topics Quantum Electron.}, fjournal = {{IEEE} Journal of Selected Topics in Quantum Electronics}, month = jul, number = {4: Biophotonics}, pages = {1--16}, pdf = {https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9964203}, volume = {29}, year = {2022}, }

@article{HinSchnHubLopZel22, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Martinez, M. and Zelger, P. and Jesacher, A. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Robust and bias-free localization of individual fixed dipole emitters achieving the Cram{\'e}r Rao bound for applications in cryo-single molecule localization microscopy}, doi = {10.1371/journal.pone.0263500}, editor = {Cebecauer, M.}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {2}, pages = {e0263500}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0263500&type=printable}, volume = {17}, year = {2022}, }

@article{BeiQue22, author = {Beinert, R. and Quellmalz, M.}, title = {Total Variation-Based Reconstruction and Phase Retrieval for Diffraction Tomography}, doi = {10.1137/22m1474382}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {3}, pages = {1373--1399}, volume = {15}, year = {2022}, }

@article{VesKraMinDreElb21, author = {Veselka, L. and Krainz, L. and Mindrinos, L. and Drexler, W. and Elbau, P. }, title = {A Quantitative Model for Optical Coherence Tomography}, doi = {10.3390/s21206864}, journal = {Sens.}, fjournal = {Sensors}, number = {20}, pages = {6864}, url = {https://www.mdpi.com/1424-8220/21/20/6864}, volume = {21}, year = {2021}, }

@article{SchnTelMerLopSch21, author = {Schneider, M.~C. and Telschow, R. and Mercier, G. and L{\'o}pez-Mart{\'i}nez, M. and Scherzer, O. and Schütz, G.~J. }, title = {A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy}, doi = {10.1371/journal.pone.0245693}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {1}, pages = {e0245693}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0245693&type=printable}, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0245693}, volume = {16}, year = {2021}, }

@article{RamSta21, author = {Ramlau, R. and Stadler, B.}, title = {An augmented wavelet reconstructor for atmospheric tomography}, doi = {10.1553/etna_vol54s256}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {256--275}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003c53f1.pdf}, volume = {54}, year = {2021}, }

@inproceedings{SheKraHubDreSch21, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Challenges for Optical Flow Estimates in Elastography}, booktitle = {Scale Space and Variational Methods in Computer Vision. SSVM 2021. Lecture Notes in Computer Science}, doi = {10.1007/978-3-030-75549-2_11}, number = {1}, pages = {128--139}, year = {2021}, }

@article{LovPreThaRit21, author = {Kv{\aa}le L{\o}vmo, M. and Pressl, B. and Thalhammer, G. and Ritsch-Marte, M.}, title = {Controlled orientation and sustained rotation of biological samples in a sono-optical microfluidic device}, doi = {10.1039/d0lc01261k}, journal = {Lab Chip}, fjournal = {Lab on a Chip}, number = {8}, pages = {1563--1578}, pdf = {https://pubs.rsc.org/en/content/articlepdf/2021/lc/d0lc01261k}, volume = {21}, year = {2021}, }

@incollection{AspFriKorSch21, author = {Aspri, A. and Frischauf, L. and Korolev, Y. and Scherzer, O.}, title = {Data Driven Reconstruction Using Frames and Riesz Bases}, booktitle = {Deterministic and Stochastic Optimal Control and Inverse Problems}, doi = {10.1201/9781003050575-13}, editor = {Jadamba, B. and Khan, A.~A. and Migórski, S. and Sama, M.}, pages = {303--318}, publisher = {CRC Press}, year = {2021}, }

@article{GerRam21, author = {Gerth, D. and Ramlau, R.}, title = {Estimating Solution Smoothness and Data Noise with Tikhonov Regularization}, doi = {10.1080/01630563.2021.2007948}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, number = {1}, pages = {88--115}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/01630563.2021.2007948}, volume = {43}, year = {2021}, }

@article{KirQueRitSchSet21, author = {Kirisits, C. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Setterqvist, E. and Steidl, G.}, title = {Fourier reconstruction for diffraction tomography of an object rotated into arbitrary orientations}, doi = {10.1088/1361-6420/ac2749}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {11}, pages = {115002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ac2749/pdf}, volume = {37}, year = {2021}, }

@article{HubRam21, author = {Hubmer, S. and Ramlau, R.}, title = {Frame decompositions of bounded linear operators in Hilbert spaces with applications in tomography}, doi = {10.1088/1361-6420/abe5b8}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abe5b8/pdf}, volume = {37}, year = {2021}, }

@incollection{LopMerSadSchSchn21, author = {L{\'o}pez-Mart{\'i}nez, M. and Mercier, G. and Sadiq, K. and Scherzer, O. and Schneider, M. and Schotland, J.~C. and Sch{\"u}tz, G.~J. and Telschow, R.}, title = {Inverse Problems of Single Molecule Localization Microscopy}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_12}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {323--376}, publisher = {Springer Nature}, year = {2021}, }

@inproceedings{StaBiaManRam21, author = {Stadler, B. and Biasi, R. and Manetti, M. and Ramlau, R.}, title = {Parallel implementation of an iterative solver for atmospheric tomography}, booktitle = {2021 21st International Conference on Computational Science and Its Applications (ICCSA)}, doi = {10.1109/iccsa54496.2021.00026}, pages = {123--132}, volume = {9909}, year = {2021}, }

@article{FosHubPloRamFra21, author = {Fosodeder, P. and Hubmer, S. and Ploier, A. and Ramlau, R. and van Frank, S. and Rankl, Ch.}, title = {Phase-contrast {TZh}-{CT} for non-destructive testing}, doi = {10.1364/oe.422961}, journal = {Opt. Express}, fjournal = {Optics Express}, number = {10}, pages = {15711}, volume = {29}, year = {2021}, }

@incollection{ElbMinVes21, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Quantitative OCT reconstructions for dispersive media}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_8}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {229--266}, publisher = {Springer, Cham}, year = {2021}, }

@article{FauHooSch20, author = {Faucher, F. and de Hoop, M.~V. and Scherzer, O.}, title = {Reciprocity-gap misfit functional for Distributed Acoustic Sensing, combining data from passive and active sources}, doi = {10.1190/geo2020-0305.1}, journal = {Geophysics}, fjournal = {Geophysics}, number = {2}, pages = {R211--R220}, pdf = {https://library.seg.org/doi/pdf/10.1190/geo2020-0305.1}, url = {https://library.seg.org/doi/10.1190/geo2020-0305.1}, volume = {86}, year = {2021}, }

@article{BruShaShiDreLei21b, author = {Brunner, E. and Shatokhina, J. and Shirazi, M.~F. and Drexler, W. and Leitgeb, R. and Pollreisz, A. and Hitzenberger, Ch.~K. and Ramlau, R. and Pircher, M.}, title = {Retinal adaptive optics imaging with a pyramid wavefront sensor}, doi = {10.1364/boe.438915}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {10}, pages = {5969}, pdf = {https://www.osapublishing.org/DirectPDFAccess/E4978F4B-01E1-4A27-B56B6512338D132E_458428/boe-12-10-5969.pdf}, volume = {12}, year = {2021}, }

@incollection{SchuSchn21, author = {Sch{\"u}tz, G.~J. and Schneider, M.~C.}, title = {Single-molecule localisation microscopy}, booktitle = {Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 1: Part I: Ex vivo biological imaging}, doi = {10.1088/978-0-7503-3059-6ch18}, pdf = {https://tomography.univie.ac.at/p/BookChapter_SMLM_SchneiderSchuetz.pdf}, year = {2021}, }

@article{RamSooHut21, author = {Ramlau, R. and Soodhalter, K.~M. and Hutterer, V.}, title = {Subspace Recycling--Based Regularization Methods}, doi = {10.1137/20m1379617}, journal = {{SIAM} J. Matrix Anal. Appl.}, fjournal = {{SIAM} Journal on Matrix Analysis and Applications}, number = {4}, pages = {1480--1505}, volume = {42}, year = {2021}, }

@incollection{KalNguSch21, author = {Kaltenbacher, B. and Nguyen, T.~T.~N. and Scherzer, O.}, title = {The Tangential Cone Condition for Some Coefficient Identification Model Problems in Parabolic PDEs}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_5}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {121--163}, publisher = {Springer, Cham}, year = {2021}, }

@incollection{NieRam21, author = {Niebsch, J. and Ramlau, R.}, title = {Tomographic Reconstruction for Single Conjugate Adaptive Optics}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_11}, month = feb, pages = {303--322}, publisher = {Springer International Publishing}, year = {2021}, }

@article{AspBanOekSch20, author = {Aspri, A. and Banert, S. and Öktem, O. and Scherzer, O.}, title = {A Data-Driven Iteratively Regularized Landweber Iteration}, doi = {10.1080/01630563.2020.1740734}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, month = mar, number = {10}, pages = {1190--1227}, url = {https://www.tandfonline.com/doi/full/10.1080/01630563.2020.1740734}, volume = {41}, year = {2020}, }

@article{HubNeuRamVos20, author = {Hubmer, S. and Neubauer, A. and Ramlau, R. and Voss, H.~U.}, title = {A conjugate-gradient approach to the parameter estimation problem of magnetic resonance advection imaging}, doi = {10.1080/17415977.2019.1708911}, journal = {Inverse Probl. Sci. Eng.}, fjournal = {Inverse Problems in Science and Engineering}, number = {8}, pages = {1154--1165}, volume = {28}, year = {2020}, }

@article{HubRam20, author = {Hubmer, S. and Ramlau, R.}, title = {A frame decomposition of the atmospheric tomography operator}, doi = {10.1088/1361-6420/aba4fe}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {9}, pages = {094001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/aba4fe/pdf}, volume = {36}, year = {2020}, }

@article{HinHubRam20, author = {Hinterer, F. and Hubmer, S. and Ramlau, R.}, title = {A note on the minimization of a Tikhonov functional with $\ell^1$-penalty}, doi = {10.1088/1361-6420/ab89c2}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {7}, pages = {074001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab89c2/pdf}, volume = {36}, year = {2020}, }

@phdthesis{Lan20, author = {Landl, E.~M.~G.}, title = {Actuator Command Reconstruction with 3-sided Pyramid Sensors in AO-OCT}, pdf = {https://epub.jku.at/obvulihs/download/pdf/5493055?originalFilename=true}, school = {Johannes Kepler Universität Linz}, type = {Master thesis}, url = {https://epub.jku.at/obvulihs/content/titleinfo/5493055}, year = {2020}, }

@article{FauSch20, author = {Faucher, F. and Scherzer, O.}, title = {Adjoint-state method for Hybridizable Discontinuous Galerkin discretization, application to the inverse acoustic wave problem}, doi = {10.1016/j.cma.2020.113406}, journal = {Comput. Math. Appl. Mech. Eng.}, fjournal = {Computer Methods in Applied Mechanics and Engineering}, pages = {113406}, pdf = {https://www.sciencedirect.com/science/article/pii/S0045782520305910/pdfft?md5=61cf2f02dc6e28088779423ce89d3369&pid=1-s2.0-S0045782520305910-main.pdf}, url = {https://www.sciencedirect.com/science/article/pii/S0045782520305910?via%3Dihub}, volume = {372}, year = {2020}, }

@article{AspBerSchMus20, author = {Aspri, A. and Beretta, E. and Scherzer, O. and Muszkieta, M.}, title = {Asymptotic Expansions for Higher Order Elliptic Equations with an Application to Quantitative Photoacoustic Tomography}, doi = {10.1137/20m1317062}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1781--1833}, volume = {13}, year = {2020}, }

@article{DhoDriRit20, author = {Dholakia, K. and Drinkwater, B.~W. and Ritsch-Marte, M.}, title = {Comparing acoustic and optical forces for biomedical research}, doi = {10.1038/s42254-020-0215-3}, journal = {Nat. Rev. Phys.}, fjournal = {Nature Reviews Physics}, number = {9}, pages = {480--491}, volume = {2}, year = {2020}, }

@article{AspKorSch20, author = {Aspri, A. and Korolev, Y. and Scherzer, O.}, title = {Data driven regularization by projection}, doi = {10.1088/1361-6420/abb61b}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = dec, number = {12}, pages = {125009}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abb61b/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abb61b}, volume = {36}, year = {2020}, }

@article{SheKraHubDreSch20, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Displacement field estimation from {OCT} images utilizing speckle information with applications in quantitative elastography}, doi = {10.1088/1361-6420/abaf65}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {124003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65}, volume = {36}, year = {2020}, }

@article{FauSchBar20, author = {Faucher, F. and Scherzer, O. and Barucq, H.}, title = {Eigenvector Models for Solving the Seismic Inverse Problem for the Helmholtz Equation}, doi = {10.1093/gji/ggaa009}, issue = {1}, journal = {Geophys. J. Int.}, fjournal = {Geophysical Journal International}, month = jan, pages = {394--414}, pdf = {https://academic.oup.com/gji/advance-article-pdf/doi/10.1093/gji/ggaa009/31766660/ggaa009.pdf}, url = {https://academic.oup.com/gji/article/221/1/394/5698305}, volume = {221}, year = {2020}, }

@article{ElbRitSchSchm20, author = {Elbau, P. and Ritsch-Marte, M. and Scherzer, O. and Schmutz, D.}, title = {Motion Reconstruction for Optical Tomography of Trapped Objects}, doi = {10.1088/1361-6420/ab67db}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {044004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db}, volume = {36}, year = {2020}, }

@incollection{RamKouHof20, author = {Ramlau, R. and Koutschan, Ch. and Hofmann, B.}, title = {On the Singular Value Decomposition of n-Fold Integration Operators}, booktitle = {Springer Proceedings in Mathematics {\&} Statistics}, doi = {10.1007/978-981-15-1592-7_11}, pages = {237--256}, publisher = {Springer Singapore}, year = {2020}, }

@phdthesis{Wei21, author = {Weissinger, L.}, title = {Realization of the Frame Decomposition of the Atmospheric Tomography Operator}, type = {Master thesis}, url = {https://epub.jku.at/obvulihs/download/pdf/5816809}, year = {2020}, }

@inproceedings{ElbMinVes20, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Reconstructing the Optical Parameters of a Layered Medium with Optical Coherence Elastography}, booktitle = {Mathematical and Numerical Approaches for Multi-Wave Inverse Problems}, doi = {10.1007/978-3-030-48634-1_8}, editor = {Beilina, L. and Bergounioux, M. and Christofol, M. and Da Silva, A. and Litman, A.}, number = {328}, pages = {105--126}, publisher = {Springer}, series = {Springer Proceedings in Mathematics \& Statistics}, year = {2020}, }

@article{KeWagRamCha20, author = {Ke, R. and Wagner, R. and Ramlau, R. and Chan, R.}, title = {Reconstruction of the High Resolution Phase in a Closed Loop Adaptive Optics System}, doi = {10.1137/19m1258426}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {2}, pages = {775--806}, volume = {13}, year = {2020}, }

@article{MelSch20, author = {Melching, M. and Scherzer, O.}, title = {Regularization with metric double integrals for vector tomography}, doi = {10.1515/jiip-2019-0084}, journal = {J. Inverse Ill-Posed Probl.}, fjournal = {Journal of Inverse and Ill-Posed Problems}, number = {6}, pages = {857--875}, pdf = {https://www.degruyter.com/document/doi/10.1515/jiip-2019-0084/pdf}, url = {https://www.degruyter.com/document/doi/10.1515/jiip-2019-0084/html}, volume = {28}, year = {2020}, }

@article{ShaHutRam20, author = {Shatokhina, I. and Hutterer, V. and Ramlau, R.}, title = {Review on methods for wavefront reconstruction from pyramid wavefront sensor data}, doi = {10.1117/1.jatis.6.1.010901}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {1}, pages = {1}, pdf = {https://www.spiedigitallibrary.org/journalArticle/Download?fullDOI=10.1117%2F1.JATIS.6.1.010901}, volume = {6}, year = {2020}, }

@article{PlaRosSchnSevBau20, author = {Platzer, R. and Rossboth, B.~K. and Schneider, M.~C. and Sevcsik, E. and Baumgart, F. and Stockinger, H. and Sch{\"u}tz, G.~J. and Huppa, J.~B. and Brameshuber, M.}, title = {Unscrambling fluorophore blinking for comprehensive cluster detection via photoactivated localization microscopy}, doi = {10.1038/s41467-020-18726-9}, journal = {Nat. Commun.}, fjournal = {Nature Communications}, number = {1}, pdf = {https://www.nature.com/articles/s41467-020-18726-9.pdf}, volume = {11}, year = {2020}, }

@article{ArnSchnHusSabBra20, author = {Arnold, A.~M. and Schneider, M.~C. and H{\"u}sson, Ch. and Sablatnig, R. and Brameshuber, M. and Baumgart, F. and Sch{\"u}tz, G.~J.}, title = {Verifying molecular clusters by 2-color localization microscopy and significance testing}, doi = {10.1038/s41598-020-60976-6}, journal = {Sci. Rep.}, fjournal = {Scientific Reports}, number = {1}, pdf = {https://www.nature.com/articles/s41598-020-60976-6.pdf}, volume = {10}, year = {2020}, }

@article{ShiBruLasPolHit20, author = {Shirazi, M.~F. and Brunner, E. and Laslandes, M. and Pollreisz, A. and Hitzenberger, Ch.~K. and Pircher, M.}, title = {Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography}, doi = {10.1364/boe.393906}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {8}, pages = {4520}, pdf = {https://www.osapublishing.org/boe/viewmedia.cfm?uri=boe-11-8-4520&seq=0}, volume = {11}, year = {2020}, }

@article{PotRamAuz19, author = {P{\"o}ttinger, M. and Ramlau, R. and Auzinger, G.}, title = {A new temporal control approach for {SCAO} systems}, doi = {10.1088/1361-6420/ab44dc}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {1}, pages = {015002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab44dc/pdf}, volume = {36}, year = {2019}, }

@article{RamRei19, author = {Ramlau, R. and Reichel, L.}, title = {Error estimates for Arnoldi{\textendash}Tikhonov regularization for ill-posed operator equations}, doi = {10.1088/1361-6420/ab0663}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0663/pdf}, volume = {35}, year = {2019}, }

@article{VarSchnSevKieBau19, author = {V{\'a}radi, T. and Schneider, M. and Sevcsik, E. and Kiesenhofer, D. and Baumgart, F. and Batta, G. and Kov{\'a}cs, T. and Platzer, R. and Huppa, J.~B. and Sz{\"o}ll{\H{o}}si, J. and Sch{\"u}tz, G.~J. and Brameshuber, M. and Nagy, P.}, title = {Homo- and Heteroassociations Drive Activation of~{ErbB}3}, doi = {10.1016/j.bpj.2019.10.001}, journal = {Biophys. J.}, fjournal = {Biophysical Journal}, number = {10}, pages = {1935--1947}, pdf = {https://www.cell.com/biophysj/fulltext/S0006-3495(19)30829-X#}, volume = {117}, year = {2019}, }

@article{BauSchnSchu19, author = {Baumgart, F. and Schneider, M. and Sch{\"u}tz, G.~J.}, title = {How T Cells Do the {\textquotedblleft}Search for the Needle in the Haystack{\textquotedblright}}, doi = {10.3389/fphy.2019.00011}, journal = {Front. Phys.}, fjournal = {Frontiers in Physics}, pdf = {https://www.frontiersin.org/articles/10.3389/fphy.2019.00011/pdf}, volume = {7}, year = {2019}, }

@article{HubKnuLiShe19, author = {Hubmer, S. and Knudsen, K. and Li, C. and Sherina, E.}, title = {Limited-Angle Acousto-Electrical Tomography}, doi = {10.1080/17415977.2018.1512983}, journal = {Inverse Probl. Sci. Eng.}, fjournal = {Inverse Problems in Science and Engineering}, number = {9}, pages = {1298--1317}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/17415977.2018.1512983?needAccess=true}, url = {https://www.tandfonline.com/doi/full/10.1080/17415977.2018.1512983}, volume = {27}, year = {2019}, }

@article{MosRitTha19, author = {Moser, S. and Ritsch-Marte, M. and Thalhammer, G.}, title = {Model-based compensation of pixel crosstalk in liquid crystal spatial light modulators}, doi = {10.1364/oe.27.025046}, journal = {Opt. Express}, fjournal = {Optics Express}, number = {18}, pages = {25046--25063}, pdf = {https://www.osapublishing.org/oe/viewmedia.cfm?uri=oe-27-18-25046&seq=0}, volume = {27}, year = {2019}, }

@inproceedings{HutShaFauObeRaf19, author = {Hutterer, V. and Janin-Potiron, P. and Shatokhina, I. and Fauvarque, O. and Obereder, A. and Raffetseder, S. and Chambouleyron, V. and Correia, C. and Fusco, T. and Neichel, B. and El-Hadi, K. and Bond, C.}, title = {Model-based wavefront reconstruction for the pyramid sensor tested on the LOOPS bench}, booktitle = {6th International Conference on Adaptive Optics for Extremely Large Telescopes, AO4ELT 2019}, pdf = {https://hal.archives-ouvertes.fr/hal-02639502/file/DOTA20094.1590658517.pdf}, url = {https://hal.archives-ouvertes.fr/hal-02639502}, year = {2019}, }

@article{BeiSchSogZul19, author = {Beigl, A. and Scherzer, O. and Sogn, J. and Zulehner, W.}, title = {Preconditioning Inverse Problems for Hyperbolic Equations with Applications to Photoacoustic Tomography}, doi = {10.1088/1361-6420/ab3d08}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = dec, number = {1}, pages = {014002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab3d08/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab3d08}, volume = {36}, year = {2019}, }

@article{HutRamSha19b, author = {Hutterer, V. and Ramlau, R. and Shatokhina, I.}, title = {Real-time adaptive optics with pyramid wavefront sensors: part I. A theoretical analysis of the pyramid sensor model}, doi = {10.1088/1361-6420/ab0656}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045007}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0656/pdf}, volume = {35}, year = {2019}, }

@article{HutRamSha19, author = {Hutterer, V. and Ramlau, R. and Shatokhina, I.}, title = {Real-time adaptive optics with pyramid wavefront sensors: part {II}. Accurate wavefront reconstruction using iterative methods}, doi = {10.1088/1361-6420/ab0900}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045008}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0900/pdf}, volume = {35}, year = {2019}, }

@article{CiaMelSch19, author = {Ciak, R. and Melching, M. and Scherzer, O.}, title = {Regularization with Metric Double Integrals of Functions with Values in a Set of Vectors}, doi = {10.1007/s10851-018-00869-6}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, pdf = {https://link.springer.com/content/pdf/10.1007%2Fs10851-018-00869-6.pdf}, url = {https://link.springer.com/article/10.1007/s10851-018-00869-6}, year = {2019}, }

@inproceedings{FauHutJanDubCor19, author = {Fauvarque, O. and Hutterer, V. and Janin-Potiron, P. and Duboisset, J. and Correia, C. and Neichel, B. and Sauvage, J.-F, and Fusco, T. and Shatokhina, I. and Ramlau, R. Chambouleyron, V. and Brûlé, Y.}, title = {The ıQuad sensor: a new Fourier-based wave front sensor derived from the 4 quadrants coronagraph}, booktitle = {6th International Conference on Adaptive Optics for Extremely Large Telescopes AO4ELT6}, pdf = {http://ao4elt6.copl.ulaval.ca/proceedings/401-Pdyj-81.pdf}, url = {http://ao4elt6.copl.ulaval.ca/proceedings/401-Pdyj-81.pdf}, year = {2019}, }

@article{KirSch18, author = {Kirisits, C. and Scherzer, O.}, title = {A Range Condition for Polyconvex Variational Regularization}, doi = {10.1080/01630563.2018.1467447}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, number = {10}, pages = {1064-1076}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/01630563.2018.1467447}, url = {https://www.tandfonline.com/doi/full/10.1080/01630563.2018.1467447}, volume = {39}, year = {2018}, }

@article{BucDonRam18, author = {Buccini, A. and Donatelli, M. and Ramlau, R.}, title = {A Semiblind Regularization Algorithm for Inverse Problems with Application to Image Deblurring}, doi = {10.1137/16m1101830}, journal = {{SIAM} J. Sci. Comput.}, fjournal = {{SIAM} Journal on Scientific Computing}, number = {1}, pages = {A452--A483}, volume = {40}, year = {2018}, }

@article{HubRam18, author = {Hubmer, S. and Ramlau, R.}, title = {Nesterov's accelerated gradient method for nonlinear ill-posed problems with a locally convex residual functional}, doi = {10.1088/1361-6420/aacebe}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {9}, pages = {095003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/aacebe/pdf}, publisher = {{IOP} Publishing}, volume = {34}, year = {2018}, }

@article{HutRam18, author = {Hutterer, V. and Ramlau, R.}, title = {Nonlinear wavefront reconstruction methods for pyramid sensors using Landweber and Landweber-Kaczmarz iterations}, doi = {10.1364/ao.57.008790}, journal = {Appl. Opt.}, fjournal = {Applied Optics}, number = {30}, pages = {8790--8804}, volume = {57}, year = {2018}, }

@article{WagHofRam18, author = {Wagner, R. and Hofer, Ch. and Ramlau, R.}, title = {Point spread function reconstruction for single-conjugate adaptive optics on extremely large telescopes}, doi = {10.1117/1.jatis.4.4.049003}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {4}, pages = {1}, volume = {4}, year = {2018}, }

@article{BeiElbSadSch18, author = {Beigl, A. and Elbau, P. and Sadiq, K. and Scherzer, O.}, title = {Quantitative Photoacoustic Imaging in the Acoustic Regime using SPIM}, doi = {10.1088/1361-6420/aab584}, eid = {054003}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = apr, number = {4}, volume = {35}, year = {2018}, }

@inproceedings{BarBauBenBizBue18, author = {Barl, L. and Baudoz, P. and Bender, R. and Bizenberger, P. and Buey, T. and Chemla, F. and Cohen, M. and Czoske, O. and Disseau, K. and Dreizler, S. and Fabricius, M. and Geis, N. and Gemperlein, H. and Genzel, R. and Gl{\"u}ck, M. and Hartl, M. and H{\"a}user, M. and Hofferbert, R. and Hopp, U. and Hubert, Z. and Huby, E. and Huet, J.-M. and Hutterer, V. and Ives, D. and Janssen, A. and Jellema, W. and Kausch, W. and Kerber, F. and Kravcar, H. and Leschinski, K. and Mandla, C. and Manhart, M. and Mohr, L. and Neumann, U. and Neumayer, N. and Richter, A. and Richter, J. and Rodeghiero, G. and Rosensteiner, M. and Schlichter, J. and Schubert, J. and Thomas, J. and Wegner, M. and Zeilinger, W. and Ziegleder, J. and Ziegler, B. and Zins, G. and Davies, R. and Alves, J. and Cl{\'e}net, Y. and Lang-Bardl, F. and Nicklas, H. and Pott, J.-U. and Ragazzoni, R. and Tolstoy, E. and Amico, P. and Anwand-Heerwart, H. and Barboza, S. and Bezawada, N. and Boland, W. and Bonifacio, P. and Borgo, B. and Chapron, F. and D{\'e}o, V. and Dupuis, O. and Falomo, R. and Fedou, P. and F{\"o}rster Schreiber, N. and Garrel, V. and Gendron, E. and Gillessen, S. and Grupp, F. and Hess, H.-J. and H{\"o}rmann, V. and Le Ruyet, B. and Massari, D. and Mei, S. and Merlin, F. and Monna, A. and Muench, N. and M{\"u}ller, F. and Musters, G. and Navarro, R. and Niebsch, J. and Plattner, M. and Przybilla, N. and Rabien, S. and Ramlau, R. and Ramos, J. and Ramsay, S. and Rhode, P. and Rix, H.-W. and Rohloff, R.-R. and Rousset, G. and Sevin, A. and Stuik, R. and Sturm, E. and Tromp, N. and Verdoes-Kleijn, G. and Vidal, F. and Wagner, R.}, title = {The {MICADO} first light imager for the {ELT}: overview, operation, simulation}, booktitle = {Ground-based and Airborne Instrumentation for Astronomy {VII}}, doi = {10.1117/12.2311483}, editor = {Hideki Takami and Christopher J. Evans and Luc Simard}, month = jul, pages = {64}, pdf = {https://www.spiedigitallibrary.org/proceedings/Download?fullDOI=10.1117%2F12.2311483}, publisher = {{SPIE}}, year = {2018}, }

@article{HutShaObeRam18, author = {Hutterer, V. and Shatokhina, I. and Obereder, A. and Ramlau, R.}, title = {{Advanced wavefront reconstruction methods for segmented Extremely Large Telescope pupils using pyramid sensors}}, doi = {10.1117/1.jatis.4.4.049005}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {4}, pages = {1 -- 18}, pdf = {https://www.spiedigitallibrary.org/journalArticle/Download?fullDOI=10.1117%2F1.JATIS.4.4.049005}, volume = {4}, year = {2018}, }

@article{BreBigLanSelAmb25, author = {Breger, A. and Biguri, A. and Landman, M.~S. and Selby, I. and Amberg, N. and Brunner, E. and Gr{\"o}hl, J. and Hatamikia, S. and Karner, C. and Ning, L. and Dittmer, S. and Roberts, M. and Sch{\"o}nlieb, C.-B.}, title = {A Study of Why We Need to Reassess Full Reference Image Quality Assessment with Medical Images}, doi = {10.1007/s10278-025-01462-1}, journal = {J. Imaging. Inform. Med.}, fjournal = {Journal of Imaging Informatics in Medicine}, number = {6}, pages = {3444--3469}, pdf = {https://link.springer.com/content/pdf/10.1007/s10278-025-01462-1.pdf}, volume = {38}, year = {2025}, }

@article{BruKunDrePolPir25, author = {Brunner, E. and Kunze, L. and Drexler, W. and Pollreisz, A. and Pircher, M.}, title = {Image Quality in Adaptive Optics Optical Coherence Tomography of Diabetic Patients}, doi = {10.3390/diagnostics15040429}, journal = {Diagnostics}, fjournal = {Diagnostics}, number = {4}, pages = {429}, pdf = {https://www.mdpi.com/2075-4418/15/4/429/pdf?version=1739348018}, volume = {15}, year = {2025}, }

@article{BruKunLaiJodDre24, author = {Brunner, E. and Kunze, L. and Laidlaw, V. and Jodlbauer, D. and Drexler, W. and Ramlau, R. and Pollreisz, A. and Pircher, M.}, title = {Improvements on speed, stability and field of view in adaptive optics OCT for anterior retinal imaging using a pyramid wavefront sensor}, doi = {10.1364/boe.533451}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {10}, pages = {6098}, pdf = {https://opg.optica.org/directpdfaccess/cc51c6fd-eff2-471e-8a06498acd127607_560947/boe-15-10-6098.pdf}, volume = {15}, year = {2024}, }

@article{VesElbMinKraDre24, author = {Veselka, L. and Elbau, P. and Mindrinos, L. and Krainz, L. and Drexler, W.}, title = {Quantitative parameter reconstruction from optical coherence tomographic data}, doi = {10.1088/1361-6420/ad0fab}, eid = {025001}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {2}, pages = {025001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad0fab/pdf}, volume = {40}, year = {2024}, }

@article{KvaDenMosLeiDre24, author = {Kv{\aa}le L{\o}vmo, M. and Deng, S. and Moser, S. and Leitgeb, R. and Drexler, W. and Ritsch-Marte, M.}, title = {Ultrasound-induced reorientation for multi-angle optical coherence tomography}, doi = {10.1038/s41467-024-46506-2}, journal = {Nat. Commun.}, fjournal = {Nature Communications}, number = {1}, pdf = {https://www.nature.com/articles/s41467-024-46506-2.pdf}, volume = {15}, year = {2024}, }

@article{HubSheRamPirLei23, author = {Hubmer, S. and Sherina, E. and Ramlau, R. and Pircher, M. and Leitgeb, R.}, title = {Subaperture-Based Digital Aberration Correction for Optical Coherence Tomography: A Novel Mathematical Approach}, doi = {10.1137/22m1543240}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1857-1885}, volume = {16}, year = {2023}, }

@article{KraSheHubLiuDre22, author = {Krainz, L. and Sherina, E. and Hubmer, S. and Liu, M. and Drexler, W. and Scherzer, O.}, title = {Quantitative Optical Coherence Elastography: A Novel Intensity-Based Inversion Method Versus Strain-Based Reconstructions}, doi = {10.1109/jstqe.2022.3225108}, journal = {{IEEE} J. Sel. Topics Quantum Electron.}, fjournal = {{IEEE} Journal of Selected Topics in Quantum Electronics}, month = jul, number = {4: Biophotonics}, pages = {1--16}, pdf = {https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9964203}, volume = {29}, year = {2022}, }

@article{VesKraMinDreElb21, author = {Veselka, L. and Krainz, L. and Mindrinos, L. and Drexler, W. and Elbau, P. }, title = {A Quantitative Model for Optical Coherence Tomography}, doi = {10.3390/s21206864}, journal = {Sens.}, fjournal = {Sensors}, number = {20}, pages = {6864}, url = {https://www.mdpi.com/1424-8220/21/20/6864}, volume = {21}, year = {2021}, }

@inproceedings{SheKraHubDreSch21, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Challenges for Optical Flow Estimates in Elastography}, booktitle = {Scale Space and Variational Methods in Computer Vision. SSVM 2021. Lecture Notes in Computer Science}, doi = {10.1007/978-3-030-75549-2_11}, number = {1}, pages = {128--139}, year = {2021}, }

@article{BruShaShiDreLei21b, author = {Brunner, E. and Shatokhina, J. and Shirazi, M.~F. and Drexler, W. and Leitgeb, R. and Pollreisz, A. and Hitzenberger, Ch.~K. and Ramlau, R. and Pircher, M.}, title = {Retinal adaptive optics imaging with a pyramid wavefront sensor}, doi = {10.1364/boe.438915}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {10}, pages = {5969}, pdf = {https://www.osapublishing.org/DirectPDFAccess/E4978F4B-01E1-4A27-B56B6512338D132E_458428/boe-12-10-5969.pdf}, volume = {12}, year = {2021}, }

@article{SheKraHubDreSch20, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Displacement field estimation from {OCT} images utilizing speckle information with applications in quantitative elastography}, doi = {10.1088/1361-6420/abaf65}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {124003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65}, volume = {36}, year = {2020}, }

@article{ShiBruLasPolHit20, author = {Shirazi, M.~F. and Brunner, E. and Laslandes, M. and Pollreisz, A. and Hitzenberger, Ch.~K. and Pircher, M.}, title = {Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography}, doi = {10.1364/boe.393906}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {8}, pages = {4520}, pdf = {https://www.osapublishing.org/boe/viewmedia.cfm?uri=boe-11-8-4520&seq=0}, volume = {11}, year = {2020}, }

@article{QueElbSchSte24, author = {Quellmalz, M. and Elbau, P. and Scherzer, O. and Steidl, G.}, title = {Motion Detection in Diffraction Tomography by Common Circle Methods}, doi = {10.1090/mcom/3869}, journal = {Math. Comp.}, fjournal = {Mathematics of Computation}, pages = {747--784}, volume = {93}, year = {2024}, }

@article{VesElbMinKraDre24, author = {Veselka, L. and Elbau, P. and Mindrinos, L. and Krainz, L. and Drexler, W.}, title = {Quantitative parameter reconstruction from optical coherence tomographic data}, doi = {10.1088/1361-6420/ad0fab}, eid = {025001}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {2}, pages = {025001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad0fab/pdf}, volume = {40}, year = {2024}, }

@article{ElbMinVes23, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Development of mathematical models for quantitative OCT: A review}, doi = {10.3934/math.2023130}, issuetitle = {Mathematical modeling and optimal control of complex systems, complex networks and multi-scale models}, journal = {AIMS Mathematics}, fjournal = {AIMS Mathematics}, number = {2}, pages = {2508-2531}, pdf = {https://www.aimspress.com/article/doi/10.3934/math.2023130}, volume = {8}, year = {2023}, }

@inproceedings{SchmElbQueRitSch23, author = {Schmutz, D. and Elbau, P. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Steidl, G.}, title = {Rigid Motion Reconstruction in Parallel Beam and Diffraction Tomography}, booktitle = {Oberwolfach Reports: Tomographic Inverse Problems - Mathematical Challenges and Novel Applications}, number = {21}, pages = {41--43}, pdf = {https://publications.mfo.de/bitstream/handle/mfo/4061/OWR_2023_21.pdf}, publisher = {Mathematisches Forschungsinstitut Oberwolfach}, url = {https://publications.mfo.de/handle/mfo/4061}, year = {2023}, }

@article{BotDonElbSch22, author = {Boţ, R. and Dong, G. and Elbau, P. and Scherzer, O.}, title = {Convergence Rates of First and Higher Order Dynamics for Solving Linear Ill-posed Problems}, doi = {10.1007/s10208-021-09536-6}, journal = {Found. Comput. Math.}, fjournal = {Foundations of Computational Mathematics}, pages = {1567--1629}, pdf = {https://link.springer.com/content/pdf/10.1007/s10208-021-09536-6.pdf}, volume = {22}, year = {2022}, }

@article{VesKraMinDreElb21, author = {Veselka, L. and Krainz, L. and Mindrinos, L. and Drexler, W. and Elbau, P. }, title = {A Quantitative Model for Optical Coherence Tomography}, doi = {10.3390/s21206864}, journal = {Sens.}, fjournal = {Sensors}, number = {20}, pages = {6864}, url = {https://www.mdpi.com/1424-8220/21/20/6864}, volume = {21}, year = {2021}, }

@incollection{ElbMinVes21, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Quantitative OCT reconstructions for dispersive media}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_8}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {229--266}, publisher = {Springer, Cham}, year = {2021}, }

@article{ElbRitSchSchm20, author = {Elbau, P. and Ritsch-Marte, M. and Scherzer, O. and Schmutz, D.}, title = {Motion Reconstruction for Optical Tomography of Trapped Objects}, doi = {10.1088/1361-6420/ab67db}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {044004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db}, volume = {36}, year = {2020}, }

@inproceedings{ElbMinVes20, author = {Elbau, P. and Mindrinos, L. and Veselka, L.}, title = {Reconstructing the Optical Parameters of a Layered Medium with Optical Coherence Elastography}, booktitle = {Mathematical and Numerical Approaches for Multi-Wave Inverse Problems}, doi = {10.1007/978-3-030-48634-1_8}, editor = {Beilina, L. and Bergounioux, M. and Christofol, M. and Da Silva, A. and Litman, A.}, number = {328}, pages = {105--126}, publisher = {Springer}, series = {Springer Proceedings in Mathematics \& Statistics}, year = {2020}, }

@article{BeiElbSadSch18, author = {Beigl, A. and Elbau, P. and Sadiq, K. and Scherzer, O.}, title = {Quantitative Photoacoustic Imaging in the Acoustic Regime using SPIM}, doi = {10.1088/1361-6420/aab584}, eid = {054003}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = apr, number = {4}, volume = {35}, year = {2018}, }

@article{JetHubRamVen26, author = {Jethwa, P. and Hubmer, S. and Ramlau, R. and Van de Ven, G.}, title = {3D full-spectrum fitting: Algorithm comparison}, doi = {10.1051/0004-6361/202557989}, journal = {Astronom. and Astrophys.}, fjournal = {Astronomy {\&} Astrophysics}, pages = {A135}, pdf = {https://www.aanda.org/articles/aa/pdf/2026/06/aa57989-25.pdf}, volume = {710}, year = {2026}, }

@article{SheHub26, author = {Sherina, E. and Hubmer, S.}, title = {On the Intensity-based Inversion Method for Quantitative Quasi-Static Elastography}, doi = {10.1088/1361-6420/ae5084}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ae5084/pdf}, volume = {42}, year = {2026}, }

@article{WeiHubStaRam26, author = {Weissinger, L. and Hubmer, S. and Stadler, B. and Ramlau, R.}, title = {Singular value-based atmospheric tomography with Fourier domain regularization}, doi = {10.1117/1.jatis.12.2.029001}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {2}, volume = {12}, year = {2026}, }

@article{RanHubHamRam25b, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {A practical guide to optimizing industrial thermal spraying through comparative multi-objective optimization}, doi = {10.1186/s13362-025-00177-w}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-025-00177-w.pdf}, volume = {15}, year = {2025}, }

@article{WeiHubRamVos25, author = {Weissinger, L. and Hubmer, S. and Ramlau, R. and Voss, H.~U.}, title = {An Inverse Problems Approach to Pulse Wave Analysis in the Human Brain}, doi = {10.1137/24m163921x}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {1}, pages = {60--88}, volume = {18}, year = {2025}, }

@article{RanHubHamRam25, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {Leveraging real-time data analysis and multiple kernel learning for manufacturing of innovative steels}, doi = {10.1186/s13362-025-00175-y}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-025-00175-y.pdf}, volume = {15}, year = {2025}, }

@article{KinHub25, author = {Kindermann, S. and Hubmer, S.}, title = {Norms in sinogram space and stability estimates for the Radon transform}, doi = {10.1088/1361-6420/adab13}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {2}, pages = {025008}, volume = {41}, year = {2025}, }

@article{HubLaiRamSheSta25, author = {Hubmer, S. and Laidlaw, V. and Ramlau, R. and Sherina, E. and Stadler, B.}, title = {On Phase Unwrapping via Digital Wavefront Sensors}, doi = {10.1137/24M1680994}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {2}, pages = {1260--1283}, volume = {18}, year = {2025}, }

@article{GfrHubRam25, author = {Gfrerer, H. and Hubmer, S. and Ramlau, R.}, title = {On SCD Semismooth* Newton methods for the efficient minimization of Tikhonov functionals with non-smooth and non-convex penalties}, doi = {10.1088/1361-6420/ade181}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {7}, pages = {075002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ade181/pdf}, volume = {41}, year = {2025}, }

@article{HamRanHubRam25, author = {Hambrock, C. and Rannetbauer, W. and Hubmer, S. and Ramlau, R.}, title = {Predicting Interaction Phenomena in HVOF Thermal Spraying of WC-CoCr: A Hybrid Experimental--Statistical Approach}, doi = {10.1007/s11666-025-02043-y}, journal = {J. Therm. Spray Technol.}, fjournal = {Journal of Thermal Spray Technology}, number = {6}, pages = {2145--2157}, pdf = {https://link.springer.com/content/pdf/10.1007/s11666-025-02043-y.pdf}, volume = {34}, year = {2025}, }

@article{RanHamHubRam25, author = {Rannetbauer, W. and Hambrock, C. and Hubmer, S. and Ramlau, R.}, title = {Virtual Sensors and Thermal Modelling for Quality Control in Industrial Thermal Spraying}, doi = {10.1016/j.procs.2025.01.266}, journal = {Procedia Comput. Sci.}, fjournal = {Procedia Computer Science}, pages = {2049--2062}, pdf = {https://www.sciencedirect.com/science/article/pii/S1877050925002741/pdf?md5=42a9be8a43e60ecd6b72a712fbe8f6f0&pid=1-s2.0-S1877050925002741-main.pdf}, volume = {253}, year = {2025}, }

@incollection{WeiHubStaRam24, author = {Weissinger, L. and Hubmer, S. and Stadler, B. and Ramlau, R.}, title = {8 Singular value and frame decomposition-based reconstruction for atmospheric tomography}, booktitle = {Inverse Problems on Large Scales}, doi = {10.1515/9783111357270-008}, pages = {151--180}, year = {2024}, }

@article{RanHamHubRam24, author = {Rannetbauer, W. and Hambrock, C. and Hubmer, S. and Ramlau, R.}, title = {Enhancing Predictive Quality in HVOF Coating Technology: A Comparative Analysis of Machine Learning Techniques}, doi = {10.1016/j.procs.2024.01.136}, journal = {Procedia Comput. Sci.}, fjournal = {Procedia Computer Science}, pages = {1377--1387}, pdf = {https://www.sciencedirect.com/science/article/pii/S1877050924001364}, volume = {232}, year = {2024}, }

@article{BruKunLaiJodDre24, author = {Brunner, E. and Kunze, L. and Laidlaw, V. and Jodlbauer, D. and Drexler, W. and Ramlau, R. and Pollreisz, A. and Pircher, M.}, title = {Improvements on speed, stability and field of view in adaptive optics OCT for anterior retinal imaging using a pyramid wavefront sensor}, doi = {10.1364/boe.533451}, journal = {Biomed. Opt. Express}, fjournal = {Biomedical Optics Express}, number = {10}, pages = {6098}, pdf = {https://opg.optica.org/directpdfaccess/cc51c6fd-eff2-471e-8a06498acd127607_560947/boe-15-10-6098.pdf}, volume = {15}, year = {2024}, }

@article{SchnHinJesSchu24, author = {Schneider, M.~C. and Hinterer, F. and Jesacher, A. and Sch{\"u}tz, G.~J.}, title = {Interactive simulation and visualization of point spread functions in single molecule imaging}, doi = {10.1016/j.optcom.2024.130463}, journal = {Opt. Commun.}, fjournal = {Optics Communications}, pages = {130463}, pdf = {https://www.sciencedirect.com/science/article/pii/S0030401824002001}, volume = {560}, year = {2024}, }

@article{RanHubHamRam24, author = {Rannetbauer, W. and Hubmer, S. and Hambrock, C. and Ramlau, R.}, title = {Predictive modelling of critical variables for improving HVOF coating using gamma regression models}, doi = {10.1186/s13362-024-00146-9}, journal = {J. Math. Ind.}, fjournal = {Journal of Mathematics in Industry}, number = {1}, pdf = {https://mathematicsinindustry.springeropen.com/counter/pdf/10.1186/s13362-024-00146-9.pdf}, volume = {14}, year = {2024}, }

@article{LiHubLuRam24, author = {Li, X. and Hubmer, S. and Lu, S. and Ramlau, R.}, title = {Regularization of Linear Inverse Problems with Irregular Noise Using Embedding Operators}, doi = {10.1137/24m1636307}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {2053--2075}, volume = {17}, year = {2024}, }

@incollection{QueWeiHubErc23, author = {Quellmalz, M. and Weissinger, L. and Hubmer, S. and Erchinger, P.~D.}, title = {A Frame Decomposition of the Funk-Radon Transform}, booktitle = {Lecture Notes in Computer Science}, doi = {10.1007/978-3-031-31975-4_4}, pages = {42--54}, year = {2023}, }

@article{HinHubJetSooVen23, author = {Hinterer, F. and Hubmer, S. and Jethwa, P. and Soodhalter, K.~M. and van de Ven, G. and Ramlau, R.}, title = {A Projected Nesterov--Kaczmarz Approach to Stellar Population-Kinematic Distribution Reconstruction in Extragalactic Archaeology}, doi = {10.1137/22m1503002}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {1}, pages = {192--222}, volume = {16}, year = {2023}, }

@article{HubSheRam23, author = {Hubmer, S. and Sherina, E. and Ramlau, R.}, title = {Characterizations of adjoint Sobolev embedding operators with applications in inverse problems}, doi = {10.1553/etna_vol59s116}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {116--144}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003e6cc3.pdf}, volume = {59}, year = {2023}, }

@article{HinSchnHubLopRam23, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Mart{\'i}nez, M. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Localization of fixed dipoles at high precision by accounting for sample drift during illumination}, doi = {10.1063/5.0137834}, journal = {Appl. Phys. Lett.}, fjournal = {Applied Physics Letters}, number = {2}, pdf = {https://pubs.aip.org/aip/apl/article-pdf/doi/10.1063/5.0137834/18042148/023703_1_5.0137834.pdf}, volume = {123}, year = {2023}, }

@article{HubSheRamPirLei23, author = {Hubmer, S. and Sherina, E. and Ramlau, R. and Pircher, M. and Leitgeb, R.}, title = {Subaperture-Based Digital Aberration Correction for Optical Coherence Tomography: A Novel Mathematical Approach}, doi = {10.1137/22m1543240}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1857-1885}, volume = {16}, year = {2023}, }

@article{HubPloRamFosFra21, author = {Hubmer, S. and Ploier, A. and Ramlau, R. and Fosodeder, P. and van Frank, S.}, title = {A mathematical approach towards {THz} tomography for non-destructive imaging}, doi = {10.3934/ipi.2021041}, journal = {Inverse Probl. Imaging}, fjournal = {Inverse Problems {\&} Imaging}, number = {1}, pages = {68--88}, pdf = {https://www.aimsciences.org/article/doi/10.3934/ipi.2021041#FullText}, volume = {16}, year = {2022}, }

@article{HubSheKinRai22, author = {Hubmer, S. and Sherina, E. and Kindermann, S. and Raik, K.}, title = {A numerical comparison of some heuristic stopping rules for nonlinear Landweber iteration}, doi = {10.1553/etna_vol57s216}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {216--241}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003dd6da.pdf}, url = {https://doi.org/10.1553/etna_vol57s216}, volume = {57}, year = {2022}, }

@article{WagSaxRamHub22, author = {Wagner, R. and Saxenhuber, D. and Ramlau, R. and Hubmer, S.}, title = {Direction dependent point spread function reconstruction for multi-conjugate adaptive optics on giant segmented mirror telescopes}, doi = {10.1016/j.ascom.2022.100590}, journal = {Astron. Comput.}, fjournal = {Astronomy and Computing}, pages = {100590}, pdf = {https://www.sciencedirect.com/science/article/pii/S2213133722000270/pdfft?md5=dac29f8b4ff2f349b7796dbdac3d4517}, volume = {40}, year = {2022}, }

@article{HubRamWei22, author = {Hubmer, S. and Ramlau, R. and Weissinger, L.}, title = {On regularization via frame decompositions with applications in tomography}, doi = {10.1088/1361-6420/ac5b86}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ac5b86/pdf}, volume = {38}, year = {2022}, }

@article{StaRam22, author = {Stadler, B. and Ramlau, R.}, title = {Performance of an iterative wavelet reconstructor for the Multi-conjugate Adaptive Optics RelaY of the Extremely Large Telescope}, doi = {10.1117/1.jatis.8.2.021503}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {2}, volume = {8}, year = {2022}, }

@article{KraSheHubLiuDre22, author = {Krainz, L. and Sherina, E. and Hubmer, S. and Liu, M. and Drexler, W. and Scherzer, O.}, title = {Quantitative Optical Coherence Elastography: A Novel Intensity-Based Inversion Method Versus Strain-Based Reconstructions}, doi = {10.1109/jstqe.2022.3225108}, journal = {{IEEE} J. Sel. Topics Quantum Electron.}, fjournal = {{IEEE} Journal of Selected Topics in Quantum Electronics}, month = jul, number = {4: Biophotonics}, pages = {1--16}, pdf = {https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9964203}, volume = {29}, year = {2022}, }

@article{HinSchnHubLopZel22, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Martinez, M. and Zelger, P. and Jesacher, A. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Robust and bias-free localization of individual fixed dipole emitters achieving the Cram{\'e}r Rao bound for applications in cryo-single molecule localization microscopy}, doi = {10.1371/journal.pone.0263500}, editor = {Cebecauer, M.}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {2}, pages = {e0263500}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0263500&type=printable}, volume = {17}, year = {2022}, }

@article{RamSta21, author = {Ramlau, R. and Stadler, B.}, title = {An augmented wavelet reconstructor for atmospheric tomography}, doi = {10.1553/etna_vol54s256}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {256--275}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003c53f1.pdf}, volume = {54}, year = {2021}, }

@inproceedings{SheKraHubDreSch21, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Challenges for Optical Flow Estimates in Elastography}, booktitle = {Scale Space and Variational Methods in Computer Vision. SSVM 2021. Lecture Notes in Computer Science}, doi = {10.1007/978-3-030-75549-2_11}, number = {1}, pages = {128--139}, year = {2021}, }

@article{GerRam21, author = {Gerth, D. and Ramlau, R.}, title = {Estimating Solution Smoothness and Data Noise with Tikhonov Regularization}, doi = {10.1080/01630563.2021.2007948}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, number = {1}, pages = {88--115}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/01630563.2021.2007948}, volume = {43}, year = {2021}, }

@article{HubRam21, author = {Hubmer, S. and Ramlau, R.}, title = {Frame decompositions of bounded linear operators in Hilbert spaces with applications in tomography}, doi = {10.1088/1361-6420/abe5b8}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abe5b8/pdf}, volume = {37}, year = {2021}, }

@inproceedings{StaBiaManRam21, author = {Stadler, B. and Biasi, R. and Manetti, M. and Ramlau, R.}, title = {Parallel implementation of an iterative solver for atmospheric tomography}, booktitle = {2021 21st International Conference on Computational Science and Its Applications (ICCSA)}, doi = {10.1109/iccsa54496.2021.00026}, pages = {123--132}, volume = {9909}, year = {2021}, }

@article{FosHubPloRamFra21, author = {Fosodeder, P. and Hubmer, S. and Ploier, A. and Ramlau, R. and van Frank, S. and Rankl, Ch.}, title = {Phase-contrast {TZh}-{CT} for non-destructive testing}, doi = {10.1364/oe.422961}, journal = {Opt. Express}, fjournal = {Optics Express}, number = {10}, pages = {15711}, volume = {29}, year = {2021}, }

@article{RamSooHut21, author = {Ramlau, R. and Soodhalter, K.~M. and Hutterer, V.}, title = {Subspace Recycling--Based Regularization Methods}, doi = {10.1137/20m1379617}, journal = {{SIAM} J. Matrix Anal. Appl.}, fjournal = {{SIAM} Journal on Matrix Analysis and Applications}, number = {4}, pages = {1480--1505}, volume = {42}, year = {2021}, }

@incollection{NieRam21, author = {Niebsch, J. and Ramlau, R.}, title = {Tomographic Reconstruction for Single Conjugate Adaptive Optics}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_11}, month = feb, pages = {303--322}, publisher = {Springer International Publishing}, year = {2021}, }

@article{HubNeuRamVos20, author = {Hubmer, S. and Neubauer, A. and Ramlau, R. and Voss, H.~U.}, title = {A conjugate-gradient approach to the parameter estimation problem of magnetic resonance advection imaging}, doi = {10.1080/17415977.2019.1708911}, journal = {Inverse Probl. Sci. Eng.}, fjournal = {Inverse Problems in Science and Engineering}, number = {8}, pages = {1154--1165}, volume = {28}, year = {2020}, }

@article{HubRam20, author = {Hubmer, S. and Ramlau, R.}, title = {A frame decomposition of the atmospheric tomography operator}, doi = {10.1088/1361-6420/aba4fe}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {9}, pages = {094001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/aba4fe/pdf}, volume = {36}, year = {2020}, }

@article{HinHubRam20, author = {Hinterer, F. and Hubmer, S. and Ramlau, R.}, title = {A note on the minimization of a Tikhonov functional with $\ell^1$-penalty}, doi = {10.1088/1361-6420/ab89c2}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {7}, pages = {074001}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab89c2/pdf}, volume = {36}, year = {2020}, }

@phdthesis{Lan20, author = {Landl, E.~M.~G.}, title = {Actuator Command Reconstruction with 3-sided Pyramid Sensors in AO-OCT}, pdf = {https://epub.jku.at/obvulihs/download/pdf/5493055?originalFilename=true}, school = {Johannes Kepler Universität Linz}, type = {Master thesis}, url = {https://epub.jku.at/obvulihs/content/titleinfo/5493055}, year = {2020}, }

@article{SheKraHubDreSch20, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Displacement field estimation from {OCT} images utilizing speckle information with applications in quantitative elastography}, doi = {10.1088/1361-6420/abaf65}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {124003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65}, volume = {36}, year = {2020}, }

@incollection{RamKouHof20, author = {Ramlau, R. and Koutschan, Ch. and Hofmann, B.}, title = {On the Singular Value Decomposition of n-Fold Integration Operators}, booktitle = {Springer Proceedings in Mathematics {\&} Statistics}, doi = {10.1007/978-981-15-1592-7_11}, pages = {237--256}, publisher = {Springer Singapore}, year = {2020}, }

@phdthesis{Wei21, author = {Weissinger, L.}, title = {Realization of the Frame Decomposition of the Atmospheric Tomography Operator}, type = {Master thesis}, url = {https://epub.jku.at/obvulihs/download/pdf/5816809}, year = {2020}, }

@article{KeWagRamCha20, author = {Ke, R. and Wagner, R. and Ramlau, R. and Chan, R.}, title = {Reconstruction of the High Resolution Phase in a Closed Loop Adaptive Optics System}, doi = {10.1137/19m1258426}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {2}, pages = {775--806}, volume = {13}, year = {2020}, }

@article{ShaHutRam20, author = {Shatokhina, I. and Hutterer, V. and Ramlau, R.}, title = {Review on methods for wavefront reconstruction from pyramid wavefront sensor data}, doi = {10.1117/1.jatis.6.1.010901}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {1}, pages = {1}, pdf = {https://www.spiedigitallibrary.org/journalArticle/Download?fullDOI=10.1117%2F1.JATIS.6.1.010901}, volume = {6}, year = {2020}, }

@article{PotRamAuz19, author = {P{\"o}ttinger, M. and Ramlau, R. and Auzinger, G.}, title = {A new temporal control approach for {SCAO} systems}, doi = {10.1088/1361-6420/ab44dc}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {1}, pages = {015002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab44dc/pdf}, volume = {36}, year = {2019}, }

@article{RamRei19, author = {Ramlau, R. and Reichel, L.}, title = {Error estimates for Arnoldi{\textendash}Tikhonov regularization for ill-posed operator equations}, doi = {10.1088/1361-6420/ab0663}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {5}, pages = {055002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0663/pdf}, volume = {35}, year = {2019}, }

@article{HubKnuLiShe19, author = {Hubmer, S. and Knudsen, K. and Li, C. and Sherina, E.}, title = {Limited-Angle Acousto-Electrical Tomography}, doi = {10.1080/17415977.2018.1512983}, journal = {Inverse Probl. Sci. Eng.}, fjournal = {Inverse Problems in Science and Engineering}, number = {9}, pages = {1298--1317}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/17415977.2018.1512983?needAccess=true}, url = {https://www.tandfonline.com/doi/full/10.1080/17415977.2018.1512983}, volume = {27}, year = {2019}, }

@inproceedings{HutShaFauObeRaf19, author = {Hutterer, V. and Janin-Potiron, P. and Shatokhina, I. and Fauvarque, O. and Obereder, A. and Raffetseder, S. and Chambouleyron, V. and Correia, C. and Fusco, T. and Neichel, B. and El-Hadi, K. and Bond, C.}, title = {Model-based wavefront reconstruction for the pyramid sensor tested on the LOOPS bench}, booktitle = {6th International Conference on Adaptive Optics for Extremely Large Telescopes, AO4ELT 2019}, pdf = {https://hal.archives-ouvertes.fr/hal-02639502/file/DOTA20094.1590658517.pdf}, url = {https://hal.archives-ouvertes.fr/hal-02639502}, year = {2019}, }

@article{HutRamSha19b, author = {Hutterer, V. and Ramlau, R. and Shatokhina, I.}, title = {Real-time adaptive optics with pyramid wavefront sensors: part I. A theoretical analysis of the pyramid sensor model}, doi = {10.1088/1361-6420/ab0656}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045007}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0656/pdf}, volume = {35}, year = {2019}, }

@article{HutRamSha19, author = {Hutterer, V. and Ramlau, R. and Shatokhina, I.}, title = {Real-time adaptive optics with pyramid wavefront sensors: part {II}. Accurate wavefront reconstruction using iterative methods}, doi = {10.1088/1361-6420/ab0900}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045008}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab0900/pdf}, volume = {35}, year = {2019}, }

@inproceedings{FauHutJanDubCor19, author = {Fauvarque, O. and Hutterer, V. and Janin-Potiron, P. and Duboisset, J. and Correia, C. and Neichel, B. and Sauvage, J.-F, and Fusco, T. and Shatokhina, I. and Ramlau, R. Chambouleyron, V. and Brûlé, Y.}, title = {The ıQuad sensor: a new Fourier-based wave front sensor derived from the 4 quadrants coronagraph}, booktitle = {6th International Conference on Adaptive Optics for Extremely Large Telescopes AO4ELT6}, pdf = {http://ao4elt6.copl.ulaval.ca/proceedings/401-Pdyj-81.pdf}, url = {http://ao4elt6.copl.ulaval.ca/proceedings/401-Pdyj-81.pdf}, year = {2019}, }

@article{BucDonRam18, author = {Buccini, A. and Donatelli, M. and Ramlau, R.}, title = {A Semiblind Regularization Algorithm for Inverse Problems with Application to Image Deblurring}, doi = {10.1137/16m1101830}, journal = {{SIAM} J. Sci. Comput.}, fjournal = {{SIAM} Journal on Scientific Computing}, number = {1}, pages = {A452--A483}, volume = {40}, year = {2018}, }

@article{HubRam18, author = {Hubmer, S. and Ramlau, R.}, title = {Nesterov's accelerated gradient method for nonlinear ill-posed problems with a locally convex residual functional}, doi = {10.1088/1361-6420/aacebe}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {9}, pages = {095003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/aacebe/pdf}, publisher = {{IOP} Publishing}, volume = {34}, year = {2018}, }

@article{HutRam18, author = {Hutterer, V. and Ramlau, R.}, title = {Nonlinear wavefront reconstruction methods for pyramid sensors using Landweber and Landweber-Kaczmarz iterations}, doi = {10.1364/ao.57.008790}, journal = {Appl. Opt.}, fjournal = {Applied Optics}, number = {30}, pages = {8790--8804}, volume = {57}, year = {2018}, }

@article{WagHofRam18, author = {Wagner, R. and Hofer, Ch. and Ramlau, R.}, title = {Point spread function reconstruction for single-conjugate adaptive optics on extremely large telescopes}, doi = {10.1117/1.jatis.4.4.049003}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {4}, pages = {1}, volume = {4}, year = {2018}, }

@inproceedings{BarBauBenBizBue18, author = {Barl, L. and Baudoz, P. and Bender, R. and Bizenberger, P. and Buey, T. and Chemla, F. and Cohen, M. and Czoske, O. and Disseau, K. and Dreizler, S. and Fabricius, M. and Geis, N. and Gemperlein, H. and Genzel, R. and Gl{\"u}ck, M. and Hartl, M. and H{\"a}user, M. and Hofferbert, R. and Hopp, U. and Hubert, Z. and Huby, E. and Huet, J.-M. and Hutterer, V. and Ives, D. and Janssen, A. and Jellema, W. and Kausch, W. and Kerber, F. and Kravcar, H. and Leschinski, K. and Mandla, C. and Manhart, M. and Mohr, L. and Neumann, U. and Neumayer, N. and Richter, A. and Richter, J. and Rodeghiero, G. and Rosensteiner, M. and Schlichter, J. and Schubert, J. and Thomas, J. and Wegner, M. and Zeilinger, W. and Ziegleder, J. and Ziegler, B. and Zins, G. and Davies, R. and Alves, J. and Cl{\'e}net, Y. and Lang-Bardl, F. and Nicklas, H. and Pott, J.-U. and Ragazzoni, R. and Tolstoy, E. and Amico, P. and Anwand-Heerwart, H. and Barboza, S. and Bezawada, N. and Boland, W. and Bonifacio, P. and Borgo, B. and Chapron, F. and D{\'e}o, V. and Dupuis, O. and Falomo, R. and Fedou, P. and F{\"o}rster Schreiber, N. and Garrel, V. and Gendron, E. and Gillessen, S. and Grupp, F. and Hess, H.-J. and H{\"o}rmann, V. and Le Ruyet, B. and Massari, D. and Mei, S. and Merlin, F. and Monna, A. and Muench, N. and M{\"u}ller, F. and Musters, G. and Navarro, R. and Niebsch, J. and Plattner, M. and Przybilla, N. and Rabien, S. and Ramlau, R. and Ramos, J. and Ramsay, S. and Rhode, P. and Rix, H.-W. and Rohloff, R.-R. and Rousset, G. and Sevin, A. and Stuik, R. and Sturm, E. and Tromp, N. and Verdoes-Kleijn, G. and Vidal, F. and Wagner, R.}, title = {The {MICADO} first light imager for the {ELT}: overview, operation, simulation}, booktitle = {Ground-based and Airborne Instrumentation for Astronomy {VII}}, doi = {10.1117/12.2311483}, editor = {Hideki Takami and Christopher J. Evans and Luc Simard}, month = jul, pages = {64}, pdf = {https://www.spiedigitallibrary.org/proceedings/Download?fullDOI=10.1117%2F12.2311483}, publisher = {{SPIE}}, year = {2018}, }

@article{HutShaObeRam18, author = {Hutterer, V. and Shatokhina, I. and Obereder, A. and Ramlau, R.}, title = {{Advanced wavefront reconstruction methods for segmented Extremely Large Telescope pupils using pyramid sensors}}, doi = {10.1117/1.jatis.4.4.049005}, journal = {J. Astronom. Telesc. Instrum. Syst.}, fjournal = {Journal of Astronomical Telescopes, Instruments, and Systems}, number = {4}, pages = {1 -- 18}, pdf = {https://www.spiedigitallibrary.org/journalArticle/Download?fullDOI=10.1117%2F1.JATIS.4.4.049005}, volume = {4}, year = {2018}, }

@article{KvaDenMosLeiDre24, author = {Kv{\aa}le L{\o}vmo, M. and Deng, S. and Moser, S. and Leitgeb, R. and Drexler, W. and Ritsch-Marte, M.}, title = {Ultrasound-induced reorientation for multi-angle optical coherence tomography}, doi = {10.1038/s41467-024-46506-2}, journal = {Nat. Commun.}, fjournal = {Nature Communications}, number = {1}, pdf = {https://www.nature.com/articles/s41467-024-46506-2.pdf}, volume = {15}, year = {2024}, }

@article{LovMosThaRit22, author = {L{\o}vmo, M.~K. and Moser, S. and Thalhammer-Thurner, G. and Ritsch-Marte, M.}, title = {Acoustofluidic trapping device for high-NA multi-angle imaging}, doi = {10.3389/fphy.2022.940115}, journal = {Front. Phys.}, fjournal = {Frontiers in Physics}, pdf = {https://www.frontiersin.org/articles/10.3389/fphy.2022.940115/pdf}, volume = {10}, year = {2022}, }

@incollection{FauKirQueSchSet22a, author = {Faucher, F. and Kirisits, C. and Quellmalz, M. and Scherzer, O. and Setterqvist, E.}, title = {Diffraction Tomography, Fourier Reconstruction, and Full Waveform Inversion}, booktitle = {Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging}, doi = {10.1007/978-3-030-03009-4_115-1}, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-03009-4_115-1}, year = {2022}, }

@article{LovPreThaRit21, author = {Kv{\aa}le L{\o}vmo, M. and Pressl, B. and Thalhammer, G. and Ritsch-Marte, M.}, title = {Controlled orientation and sustained rotation of biological samples in a sono-optical microfluidic device}, doi = {10.1039/d0lc01261k}, journal = {Lab Chip}, fjournal = {Lab on a Chip}, number = {8}, pages = {1563--1578}, pdf = {https://pubs.rsc.org/en/content/articlepdf/2021/lc/d0lc01261k}, volume = {21}, year = {2021}, }

@article{KirQueRitSchSet21, author = {Kirisits, C. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Setterqvist, E. and Steidl, G.}, title = {Fourier reconstruction for diffraction tomography of an object rotated into arbitrary orientations}, doi = {10.1088/1361-6420/ac2749}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {11}, pages = {115002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ac2749/pdf}, volume = {37}, year = {2021}, }

@article{DhoDriRit20, author = {Dholakia, K. and Drinkwater, B.~W. and Ritsch-Marte, M.}, title = {Comparing acoustic and optical forces for biomedical research}, doi = {10.1038/s42254-020-0215-3}, journal = {Nat. Rev. Phys.}, fjournal = {Nature Reviews Physics}, number = {9}, pages = {480--491}, volume = {2}, year = {2020}, }

@article{ElbRitSchSchm20, author = {Elbau, P. and Ritsch-Marte, M. and Scherzer, O. and Schmutz, D.}, title = {Motion Reconstruction for Optical Tomography of Trapped Objects}, doi = {10.1088/1361-6420/ab67db}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {044004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db}, volume = {36}, year = {2020}, }

@article{MosRitTha19, author = {Moser, S. and Ritsch-Marte, M. and Thalhammer, G.}, title = {Model-based compensation of pixel crosstalk in liquid crystal spatial light modulators}, doi = {10.1364/oe.27.025046}, journal = {Opt. Express}, fjournal = {Optics Express}, number = {18}, pages = {25046--25063}, pdf = {https://www.osapublishing.org/oe/viewmedia.cfm?uri=oe-27-18-25046&seq=0}, volume = {27}, year = {2019}, }

@article{SheHub26, author = {Sherina, E. and Hubmer, S.}, title = {On the Intensity-based Inversion Method for Quantitative Quasi-Static Elastography}, doi = {10.1088/1361-6420/ae5084}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {045004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ae5084/pdf}, volume = {42}, year = {2026}, }

@article{AspSch25, author = {Aspri, A. and Scherzer, O.}, title = {Analysis of generalized iteratively regularized Landweber iterations driven by data}, address = {Berlin, Boston}, booktitle = {Data-driven Models in Inverse Problems}, doi = {10.1515/9783111251233-008}, editor = {Bubba, T.~A.}, pages = {273--302}, publisher = {De Gruyter}, year = {2025}, }

@article{FriSchShi25, author = {Frischauf, L. and Scherzer, O. and Shi, C.}, title = {Classification with neural networks with quadratic decision functions}, address = {Berlin, Boston}, booktitle = {Data-driven Models in Inverse Problems}, doi = {10.1515/9783111251233-014}, editor = {Bubba, T.~A. }, pages = {471--494}, publisher = {De Gruyter}, year = {2025}, }

@article{FosKitSch25, author = {Foschiatti, S. and Kittenberger, A. and Scherzer, O.}, title = {Deciphering Scrolls with Tomography: A Training Experiment}, doi = {10.1090/noti3248}, journal = {Notices Amer. Math. Soc.}, fjournal = {Notices of the American Mathematical Society}, number = {10}, pages = {1146--1155}, pdf = {https://www.ams.org/journals/notices/202510/rnoti-p1146.pdf}, volume = {72}, year = {2025}, }

@article{KirQueSet25, author = {Kirisits, C. and Quellmalz, M. and Setterqvist, E.}, title = {Generalized Fourier Diffraction Theorem and Filtered Backpropagation for Tomographic Reconstruction}, doi = {10.1137/24M167370X}, issue = {1}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, pages = {665--700}, volume = {18}, year = {2025}, }

@article{HubLaiRamSheSta25, author = {Hubmer, S. and Laidlaw, V. and Ramlau, R. and Sherina, E. and Stadler, B.}, title = {On Phase Unwrapping via Digital Wavefront Sensors}, doi = {10.1137/24M1680994}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {2}, pages = {1260--1283}, volume = {18}, year = {2025}, }

@article{AspFriSch25, author = {Aspri, A. and Frischauf, L. and Scherzer, O.}, title = {Spectral function space learning and numerical linear algebra networks for solving linear inverse problems}, doi = {10.1553/etna_vol64s23}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {23--44}, pdf = {https://epub.oeaw.ac.at/0xc1aa5572_0x0040f3fd.pdf}, volume = {64}, year = {2025}, }

@incollection{KirRaiSchStrYan25, author = {Kirisits , C. and Raik, K. and Scherzer, O. and Strohmenger, C.~U. and Yan, J.}, title = {Using the transport of intensity and the transport of phase equation for phase retrieval}, booktitle = {Inverse Problems on Large Scales. Mathematical Modelling and Computational Methods}, doi = {10.1515/9783111357270-004}, editor = {Mejri , B. and Ramlau, R. and Scherzer, O.}, pages = {53–68}, publisher = {De Gruyter}, series = {Radon Series on Computational and Applied Mathematics}, volume = {32}, year = {2025}, }

@article{GanMejSch25, author = {Gangl, P. and Mejri, B. and Scherzer, O.}, title = {Vertex Characterization Via Second-Order Topological Derivatives}, doi = {10.1007/s10851-025-01269-3}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, number = {5}, volume = {67}, year = {2025}, }

@article{MejSch24, author = {Mejri, B. and Scherzer, O.}, title = {An Inversion Scheme for Elastic Diffraction Tomography Based on Mode Separation}, doi = {10.1137/22M1538909}, journal = {{SIAM} J. Appl. Math.}, fjournal = {{SIAM} Journal on Applied Mathematics}, month = feb, number = {1}, pages = {165--188}, volume = {84}, year = {2024}, }

@article{DonSadSchScho24, author = {Dong, Y. and Sadiq, K. and Scherzer, O. and Schotland, J.~C.}, title = {Computational inverse scattering with internal sources: A reproducing kernel Hilbert space approach}, doi = {10.1103/PhysRevE.110.065302}, journal = {Phys. Rev. E}, fjournal = {Physical Review E}, month = 12, number = {6}, pages = {065302}, url = {https://link.aps.org/doi/10.1103/PhysRevE.110.065302}, volume = {110}, year = {2024}, }

@article{KirNauSchYan24, author = {Kirisits, C. and Naujoks, N. and Scherzer, O. and Yang, H.}, title = {Diffraction tomography for incident Herglotz waves}, doi = {10.1088/1361-6420/ad7d2d}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {11}, pages = {115007}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad7d2d/pdf}, volume = {40}, year = {2024}, }

@article{QueElbSchSte24, author = {Quellmalz, M. and Elbau, P. and Scherzer, O. and Steidl, G.}, title = {Motion Detection in Diffraction Tomography by Common Circle Methods}, doi = {10.1090/mcom/3869}, journal = {Math. Comp.}, fjournal = {Mathematics of Computation}, pages = {747--784}, volume = {93}, year = {2024}, }

@article{FriSchShi24, author = {Frischauf, L. and Scherzer, O. and Shi, C.}, title = {Quadratic Neural Networks for Solving Inverse Problems}, doi = {10.1080/01630563.2024.2316580}, issue = {2}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, pages = {112--135}, pdf = {https://www.tandfonline.com/doi/epdf/10.1080/01630563.2024.2316580}, year = {2024}, }

@article{ParKirSch24, author = {Parzer, F. and Kirisits, C. and Scherzer, O.}, title = {Uncertainty Quantification for Scale-Space Blob Detection}, doi = {10.1007/s10851-024-01194-x}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, pages = {697--717}, pdf = {https://link.springer.com/content/pdf/10.1007/s10851-024-01194-x.pdf}, volume = {66}, year = {2024}, }

@article{HubSheRam23, author = {Hubmer, S. and Sherina, E. and Ramlau, R.}, title = {Characterizations of adjoint Sobolev embedding operators with applications in inverse problems}, doi = {10.1553/etna_vol59s116}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {116--144}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003e6cc3.pdf}, volume = {59}, year = {2023}, }

@article{SchHofNas23, author = {Scherzer, O. and Hofmann, B. and Nashed, Z.}, title = {Gauss{\textendash}Newton method for solving linear inverse problems with neural network coders}, doi = {10.1007/s43670-023-00066-6}, journal = {Sampl. Theory Signal Process. Data Anal.}, fjournal = {Sampling Theory, Signal Processing, and Data Analysis}, number = {2}, pdf = {https://link.springer.com/content/pdf/10.1007/s43670-023-00066-6.pdf}, volume = {21}, year = {2023}, }

@article{FauSch23, author = {Faucher, F. and Scherzer, O.}, title = {Quantitative inverse problem in visco-acoustic media under attenuation model uncertainty}, doi = {10.1016/j.jcp.2022.111685}, journal = {J. Comput. Phys.}, fjournal = {Journal of Computational Physics}, month = jan, pages = {111685}, pdf = {https://www.sciencedirect.com/science/article/pii/S0021999122007483/pdfft?md5=89a23717cccf53e69bee4beb80934dfe&pid=1-s2.0-S0021999122007483-main.pdf}, volume = {472}, year = {2023}, }

@inproceedings{SchmElbQueRitSch23, author = {Schmutz, D. and Elbau, P. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Steidl, G.}, title = {Rigid Motion Reconstruction in Parallel Beam and Diffraction Tomography}, booktitle = {Oberwolfach Reports: Tomographic Inverse Problems - Mathematical Challenges and Novel Applications}, number = {21}, pages = {41--43}, pdf = {https://publications.mfo.de/bitstream/handle/mfo/4061/OWR_2023_21.pdf}, publisher = {Mathematisches Forschungsinstitut Oberwolfach}, url = {https://publications.mfo.de/handle/mfo/4061}, year = {2023}, }

@article{HubSheRamPirLei23, author = {Hubmer, S. and Sherina, E. and Ramlau, R. and Pircher, M. and Leitgeb, R.}, title = {Subaperture-Based Digital Aberration Correction for Optical Coherence Tomography: A Novel Mathematical Approach}, doi = {10.1137/22m1543240}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1857-1885}, volume = {16}, year = {2023}, }

@article{FauSch23b, author = {Faucher, F. and Scherzer, O.}, title = {Synthetic dataset for visco-acoustic imaging}, doi = {10.1016/j.dib.2023.109199}, journal = {Data Br.}, fjournal = {Data in Brief}, pages = {109199}, pdf = {https://www.sciencedirect.com/science/article/pii/S2352340923003189/pdfft?md5=671cb00da25697e4b248a24b6fbef5e0&pid=1-s2.0-S2352340923003189-main.pdf}, volume = {48}, year = {2023}, }

@article{ParJetBoeAlfSch23, author = {Parzer, F. and Jethwa, P. and Boecker, A. and Alfaro-Cuello, M. and Scherzer, O. and van de Ven, G.}, title = {Uncertainty-aware blob detection with an application to integrated-light stellar population recoveries}, doi = {10.1051/0004-6361/202244739}, journal = {Astronom. and Astrophys.}, fjournal = {Astronomy {\&} Astrophysics}, pdf = {https://www.aanda.org/articles/aa/pdf/forth/aa44739-22.pdf}, year = {2023}, }

@article{HubSheKinRai22, author = {Hubmer, S. and Sherina, E. and Kindermann, S. and Raik, K.}, title = {A numerical comparison of some heuristic stopping rules for nonlinear Landweber iteration}, doi = {10.1553/etna_vol57s216}, journal = {Electron. Trans. Numer. Anal.}, fjournal = {Electronic Transactions on Numerical Analysis}, pages = {216--241}, pdf = {https://epub.oeaw.ac.at/0xc1aa5576_0x003dd6da.pdf}, url = {https://doi.org/10.1553/etna_vol57s216}, volume = {57}, year = {2022}, }

@article{KitMinSch22, author = {Kittenberger, A. and Mindrinos, L. and Scherzer, O.}, title = {Computed Origami Tomography}, doi = {10.1137/20M1378247}, journal = {{SIAM} Rev.}, fjournal = {{SIAM} Review}, number = {2}, pages = {469--484}, url = {https://epubs.siam.org/doi/10.1137/20M1378247}, volume = {64}, year = {2022}, }

@article{BotDonElbSch22, author = {Boţ, R. and Dong, G. and Elbau, P. and Scherzer, O.}, title = {Convergence Rates of First and Higher Order Dynamics for Solving Linear Ill-posed Problems}, doi = {10.1007/s10208-021-09536-6}, journal = {Found. Comput. Math.}, fjournal = {Foundations of Computational Mathematics}, pages = {1567--1629}, pdf = {https://link.springer.com/content/pdf/10.1007/s10208-021-09536-6.pdf}, volume = {22}, year = {2022}, }

@incollection{FauKirQueSchSet22a, author = {Faucher, F. and Kirisits, C. and Quellmalz, M. and Scherzer, O. and Setterqvist, E.}, title = {Diffraction Tomography, Fourier Reconstruction, and Full Waveform Inversion}, booktitle = {Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging}, doi = {10.1007/978-3-030-03009-4_115-1}, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-03009-4_115-1}, year = {2022}, }

@article{FriMelSch22, author = {Frischauf, L. and Melching, M. and Scherzer, O.}, title = {Diffusion tensor regularization with metric double integrals}, doi = {10.1515/jiip-2021-0041}, journal = {J. Inverse Ill-Posed Probl.}, fjournal = {Journal of Inverse and Ill-Posed Problems}, number = {2}, pages = {163--190}, pdf = {https://www.degruyter.com/document/doi/10.1515/jiip-2021-0041/pdf}, volume = {30}, year = {2022}, }

@article{ParSch22, author = {Parzer, F. and Scherzer, O.}, title = {On convergence rates of adaptive ensemble Kalman inversion for linear ill-posed problems}, doi = {10.1007/s00211-022-01314-y}, journal = {Numer. Math.}, fjournal = {Numerische Mathematik}, pdf = {https://link.springer.com/content/pdf/10.1007/s00211-022-01314-y.pdf}, url = {https://link.springer.com/article/10.1007/s00211-022-01314-y}, year = {2022}, }

@article{KraSheHubLiuDre22, author = {Krainz, L. and Sherina, E. and Hubmer, S. and Liu, M. and Drexler, W. and Scherzer, O.}, title = {Quantitative Optical Coherence Elastography: A Novel Intensity-Based Inversion Method Versus Strain-Based Reconstructions}, doi = {10.1109/jstqe.2022.3225108}, journal = {{IEEE} J. Sel. Topics Quantum Electron.}, fjournal = {{IEEE} Journal of Selected Topics in Quantum Electronics}, month = jul, number = {4: Biophotonics}, pages = {1--16}, pdf = {https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=9964203}, volume = {29}, year = {2022}, }

@article{SchnTelMerLopSch21, author = {Schneider, M.~C. and Telschow, R. and Mercier, G. and L{\'o}pez-Mart{\'i}nez, M. and Scherzer, O. and Schütz, G.~J. }, title = {A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy}, doi = {10.1371/journal.pone.0245693}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {1}, pages = {e0245693}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0245693&type=printable}, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0245693}, volume = {16}, year = {2021}, }

@inproceedings{SheKraHubDreSch21, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Challenges for Optical Flow Estimates in Elastography}, booktitle = {Scale Space and Variational Methods in Computer Vision. SSVM 2021. Lecture Notes in Computer Science}, doi = {10.1007/978-3-030-75549-2_11}, number = {1}, pages = {128--139}, year = {2021}, }

@incollection{AspFriKorSch21, author = {Aspri, A. and Frischauf, L. and Korolev, Y. and Scherzer, O.}, title = {Data Driven Reconstruction Using Frames and Riesz Bases}, booktitle = {Deterministic and Stochastic Optimal Control and Inverse Problems}, doi = {10.1201/9781003050575-13}, editor = {Jadamba, B. and Khan, A.~A. and Migórski, S. and Sama, M.}, pages = {303--318}, publisher = {CRC Press}, year = {2021}, }

@article{KirQueRitSchSet21, author = {Kirisits, C. and Quellmalz, M. and Ritsch-Marte, M. and Scherzer, O. and Setterqvist, E. and Steidl, G.}, title = {Fourier reconstruction for diffraction tomography of an object rotated into arbitrary orientations}, doi = {10.1088/1361-6420/ac2749}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {11}, pages = {115002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ac2749/pdf}, volume = {37}, year = {2021}, }

@incollection{LopMerSadSchSchn21, author = {L{\'o}pez-Mart{\'i}nez, M. and Mercier, G. and Sadiq, K. and Scherzer, O. and Schneider, M. and Schotland, J.~C. and Sch{\"u}tz, G.~J. and Telschow, R.}, title = {Inverse Problems of Single Molecule Localization Microscopy}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_12}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {323--376}, publisher = {Springer Nature}, year = {2021}, }

@article{FauHooSch20, author = {Faucher, F. and de Hoop, M.~V. and Scherzer, O.}, title = {Reciprocity-gap misfit functional for Distributed Acoustic Sensing, combining data from passive and active sources}, doi = {10.1190/geo2020-0305.1}, journal = {Geophysics}, fjournal = {Geophysics}, number = {2}, pages = {R211--R220}, pdf = {https://library.seg.org/doi/pdf/10.1190/geo2020-0305.1}, url = {https://library.seg.org/doi/10.1190/geo2020-0305.1}, volume = {86}, year = {2021}, }

@incollection{KalNguSch21, author = {Kaltenbacher, B. and Nguyen, T.~T.~N. and Scherzer, O.}, title = {The Tangential Cone Condition for Some Coefficient Identification Model Problems in Parabolic PDEs}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_5}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {121--163}, publisher = {Springer, Cham}, year = {2021}, }

@article{AspBanOekSch20, author = {Aspri, A. and Banert, S. and Öktem, O. and Scherzer, O.}, title = {A Data-Driven Iteratively Regularized Landweber Iteration}, doi = {10.1080/01630563.2020.1740734}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, month = mar, number = {10}, pages = {1190--1227}, url = {https://www.tandfonline.com/doi/full/10.1080/01630563.2020.1740734}, volume = {41}, year = {2020}, }

@article{FauSch20, author = {Faucher, F. and Scherzer, O.}, title = {Adjoint-state method for Hybridizable Discontinuous Galerkin discretization, application to the inverse acoustic wave problem}, doi = {10.1016/j.cma.2020.113406}, journal = {Comput. Math. Appl. Mech. Eng.}, fjournal = {Computer Methods in Applied Mechanics and Engineering}, pages = {113406}, pdf = {https://www.sciencedirect.com/science/article/pii/S0045782520305910/pdfft?md5=61cf2f02dc6e28088779423ce89d3369&pid=1-s2.0-S0045782520305910-main.pdf}, url = {https://www.sciencedirect.com/science/article/pii/S0045782520305910?via%3Dihub}, volume = {372}, year = {2020}, }

@article{AspBerSchMus20, author = {Aspri, A. and Beretta, E. and Scherzer, O. and Muszkieta, M.}, title = {Asymptotic Expansions for Higher Order Elliptic Equations with an Application to Quantitative Photoacoustic Tomography}, doi = {10.1137/20m1317062}, journal = {{SIAM} J. Imaging Sciences}, fjournal = {{SIAM} Journal on Imaging Sciences}, number = {4}, pages = {1781--1833}, volume = {13}, year = {2020}, }

@article{AspKorSch20, author = {Aspri, A. and Korolev, Y. and Scherzer, O.}, title = {Data driven regularization by projection}, doi = {10.1088/1361-6420/abb61b}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = dec, number = {12}, pages = {125009}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abb61b/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abb61b}, volume = {36}, year = {2020}, }

@article{SheKraHubDreSch20, author = {Sherina, E. and Krainz, L. and Hubmer, S. and Drexler, W. and Scherzer, O.}, title = {Displacement field estimation from {OCT} images utilizing speckle information with applications in quantitative elastography}, doi = {10.1088/1361-6420/abaf65}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {124003}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/abaf65}, volume = {36}, year = {2020}, }

@article{FauSchBar20, author = {Faucher, F. and Scherzer, O. and Barucq, H.}, title = {Eigenvector Models for Solving the Seismic Inverse Problem for the Helmholtz Equation}, doi = {10.1093/gji/ggaa009}, issue = {1}, journal = {Geophys. J. Int.}, fjournal = {Geophysical Journal International}, month = jan, pages = {394--414}, pdf = {https://academic.oup.com/gji/advance-article-pdf/doi/10.1093/gji/ggaa009/31766660/ggaa009.pdf}, url = {https://academic.oup.com/gji/article/221/1/394/5698305}, volume = {221}, year = {2020}, }

@article{ElbRitSchSchm20, author = {Elbau, P. and Ritsch-Marte, M. and Scherzer, O. and Schmutz, D.}, title = {Motion Reconstruction for Optical Tomography of Trapped Objects}, doi = {10.1088/1361-6420/ab67db}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {4}, pages = {044004}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab67db}, volume = {36}, year = {2020}, }

@article{MelSch20, author = {Melching, M. and Scherzer, O.}, title = {Regularization with metric double integrals for vector tomography}, doi = {10.1515/jiip-2019-0084}, journal = {J. Inverse Ill-Posed Probl.}, fjournal = {Journal of Inverse and Ill-Posed Problems}, number = {6}, pages = {857--875}, pdf = {https://www.degruyter.com/document/doi/10.1515/jiip-2019-0084/pdf}, url = {https://www.degruyter.com/document/doi/10.1515/jiip-2019-0084/html}, volume = {28}, year = {2020}, }

@article{BeiSchSogZul19, author = {Beigl, A. and Scherzer, O. and Sogn, J. and Zulehner, W.}, title = {Preconditioning Inverse Problems for Hyperbolic Equations with Applications to Photoacoustic Tomography}, doi = {10.1088/1361-6420/ab3d08}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = dec, number = {1}, pages = {014002}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ab3d08/pdf}, url = {https://iopscience.iop.org/article/10.1088/1361-6420/ab3d08}, volume = {36}, year = {2019}, }

@article{CiaMelSch19, author = {Ciak, R. and Melching, M. and Scherzer, O.}, title = {Regularization with Metric Double Integrals of Functions with Values in a Set of Vectors}, doi = {10.1007/s10851-018-00869-6}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, pdf = {https://link.springer.com/content/pdf/10.1007%2Fs10851-018-00869-6.pdf}, url = {https://link.springer.com/article/10.1007/s10851-018-00869-6}, year = {2019}, }

@article{KirSch18, author = {Kirisits, C. and Scherzer, O.}, title = {A Range Condition for Polyconvex Variational Regularization}, doi = {10.1080/01630563.2018.1467447}, journal = {Numer. Funct. Anal. Optim.}, fjournal = {Numerical Functional Analysis and Optimization}, number = {10}, pages = {1064-1076}, pdf = {https://www.tandfonline.com/doi/pdf/10.1080/01630563.2018.1467447}, url = {https://www.tandfonline.com/doi/full/10.1080/01630563.2018.1467447}, volume = {39}, year = {2018}, }

@article{BeiElbSadSch18, author = {Beigl, A. and Elbau, P. and Sadiq, K. and Scherzer, O.}, title = {Quantitative Photoacoustic Imaging in the Acoustic Regime using SPIM}, doi = {10.1088/1361-6420/aab584}, eid = {054003}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, month = apr, number = {4}, volume = {35}, year = {2018}, }

@article{SchnHinJesSchu24, author = {Schneider, M.~C. and Hinterer, F. and Jesacher, A. and Sch{\"u}tz, G.~J.}, title = {Interactive simulation and visualization of point spread functions in single molecule imaging}, doi = {10.1016/j.optcom.2024.130463}, journal = {Opt. Commun.}, fjournal = {Optics Communications}, pages = {130463}, pdf = {https://www.sciencedirect.com/science/article/pii/S0030401824002001}, volume = {560}, year = {2024}, }

@article{HinSchnHubLopRam23, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Mart{\'i}nez, M. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Localization of fixed dipoles at high precision by accounting for sample drift during illumination}, doi = {10.1063/5.0137834}, journal = {Appl. Phys. Lett.}, fjournal = {Applied Physics Letters}, number = {2}, pdf = {https://pubs.aip.org/aip/apl/article-pdf/doi/10.1063/5.0137834/18042148/023703_1_5.0137834.pdf}, volume = {123}, year = {2023}, }

@article{SchnSchu22, author = {Schneider, M.~C. and Sch{\"u}tz, G.~J.}, title = {Don't Be Fooled by Randomness: Valid p-Values for Single Molecule Microscopy}, doi = {10.3389/fbinf.2022.811053}, journal = {Front. Bioinform.}, fjournal = {Frontiers in Bioinformatics}, pdf = {https://www.frontiersin.org/articles/10.3389/fbinf.2022.811053/full}, volume = {2}, year = {2022}, }

@article{HinSchnHubLopZel22, author = {Hinterer, F. and Schneider, M.~C. and Hubmer, S. and L{\'o}pez-Martinez, M. and Zelger, P. and Jesacher, A. and Ramlau, R. and Sch{\"u}tz, G.~J.}, title = {Robust and bias-free localization of individual fixed dipole emitters achieving the Cram{\'e}r Rao bound for applications in cryo-single molecule localization microscopy}, doi = {10.1371/journal.pone.0263500}, editor = {Cebecauer, M.}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {2}, pages = {e0263500}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0263500&type=printable}, volume = {17}, year = {2022}, }

@article{SchnTelMerLopSch21, author = {Schneider, M.~C. and Telschow, R. and Mercier, G. and L{\'o}pez-Mart{\'i}nez, M. and Scherzer, O. and Schütz, G.~J. }, title = {A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy}, doi = {10.1371/journal.pone.0245693}, journal = {{PLoS} {ONE}}, fjournal = {{PLoS} {ONE}}, number = {1}, pages = {e0245693}, pdf = {https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0245693&type=printable}, url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0245693}, volume = {16}, year = {2021}, }

@incollection{LopMerSadSchSchn21, author = {L{\'o}pez-Mart{\'i}nez, M. and Mercier, G. and Sadiq, K. and Scherzer, O. and Schneider, M. and Schotland, J.~C. and Sch{\"u}tz, G.~J. and Telschow, R.}, title = {Inverse Problems of Single Molecule Localization Microscopy}, booktitle = {Time-dependent Problems in Imaging and Parameter Identification}, doi = {10.1007/978-3-030-57784-1_12}, editor = {Kaltenbacher, B. and Schuster, T. and Wald, A.}, pages = {323--376}, publisher = {Springer Nature}, year = {2021}, }

@incollection{SchuSchn21, author = {Sch{\"u}tz, G.~J. and Schneider, M.~C.}, title = {Single-molecule localisation microscopy}, booktitle = {Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 1: Part I: Ex vivo biological imaging}, doi = {10.1088/978-0-7503-3059-6ch18}, pdf = {https://tomography.univie.ac.at/p/BookChapter_SMLM_SchneiderSchuetz.pdf}, year = {2021}, }

@article{PlaRosSchnSevBau20, author = {Platzer, R. and Rossboth, B.~K. and Schneider, M.~C. and Sevcsik, E. and Baumgart, F. and Stockinger, H. and Sch{\"u}tz, G.~J. and Huppa, J.~B. and Brameshuber, M.}, title = {Unscrambling fluorophore blinking for comprehensive cluster detection via photoactivated localization microscopy}, doi = {10.1038/s41467-020-18726-9}, journal = {Nat. Commun.}, fjournal = {Nature Communications}, number = {1}, pdf = {https://www.nature.com/articles/s41467-020-18726-9.pdf}, volume = {11}, year = {2020}, }

@article{ArnSchnHusSabBra20, author = {Arnold, A.~M. and Schneider, M.~C. and H{\"u}sson, Ch. and Sablatnig, R. and Brameshuber, M. and Baumgart, F. and Sch{\"u}tz, G.~J.}, title = {Verifying molecular clusters by 2-color localization microscopy and significance testing}, doi = {10.1038/s41598-020-60976-6}, journal = {Sci. Rep.}, fjournal = {Scientific Reports}, number = {1}, pdf = {https://www.nature.com/articles/s41598-020-60976-6.pdf}, volume = {10}, year = {2020}, }

@article{VarSchnSevKieBau19, author = {V{\'a}radi, T. and Schneider, M. and Sevcsik, E. and Kiesenhofer, D. and Baumgart, F. and Batta, G. and Kov{\'a}cs, T. and Platzer, R. and Huppa, J.~B. and Sz{\"o}ll{\H{o}}si, J. and Sch{\"u}tz, G.~J. and Brameshuber, M. and Nagy, P.}, title = {Homo- and Heteroassociations Drive Activation of~{ErbB}3}, doi = {10.1016/j.bpj.2019.10.001}, journal = {Biophys. J.}, fjournal = {Biophysical Journal}, number = {10}, pages = {1935--1947}, pdf = {https://www.cell.com/biophysj/fulltext/S0006-3495(19)30829-X#}, volume = {117}, year = {2019}, }

@article{BauSchnSchu19, author = {Baumgart, F. and Schneider, M. and Sch{\"u}tz, G.~J.}, title = {How T Cells Do the {\textquotedblleft}Search for the Needle in the Haystack{\textquotedblright}}, doi = {10.3389/fphy.2019.00011}, journal = {Front. Phys.}, fjournal = {Frontiers in Physics}, pdf = {https://www.frontiersin.org/articles/10.3389/fphy.2019.00011/pdf}, volume = {7}, year = {2019}, }

@article{WalSte25, author = {Wald, Ch. and Steidl, G.}, title = {A study of particle motion in the presence of clusters}, doi = {10.1080/03610918.2025.2450706}, journal = {Commun. Stat. Simul. Comput.}, fjournal = {Communications in Statistics - Simulation and Computation}, number = {5}, pages = {1566--1576}, pdf = {https://www.tandfonline.com/doi/epdf/10.1080/03610918.2025.2450706?needAccess=true}, volume = {55}, year = {2025}, }

@inproceedings{HerJahQue25, author = {Hertrich, J. and Jahn, T. and Quellmalz, M.}, title = {Fast Summation of Radial Kernels via {QMC} Slicing}, booktitle = {The Thirteenth International Conference on Learning Representations ({ICLR})}, pdf = {https://openreview.net/pdf?id=iNmVX9lx9l}, url = {https://openreview.net/forum?id=iNmVX9lx9l}, year = {2025}, }

@inproceedings{CheWalDuoSte25, author = {Chemseddine, J. and Wald, Ch. and Duong, R. and Steidl, G.}, title = {Neural Sampling from Boltzmann Densities: Fisher-Rao Curves in the Wasserstein Geometry}, booktitle = {The Thirteenth International Conference on Learning Representations}, pdf = {https://openreview.net/pdf?id=TUvg5uwdeG}, url = {https://openreview.net/forum?id=TUvg5uwdeG}, year = {2025}, }

@inproceedings{HerWalAltHag24, author = {Hertrich, J. and Wald, Ch. and Altekr{\"u}ger, F. and Hagemann, P.}, title = {Generative Sliced {MMD} Flows with Riesz Kernels}, booktitle = {The Twelfth International Conference on Learning Representations}, url = {https://openreview.net/forum?id=VdkGRV1vcf}, year = {2024}, }

@article{QueElbSchSte24, author = {Quellmalz, M. and Elbau, P. and Scherzer, O. and Steidl, G.}, title = {Motion Detection in Diffraction Tomography by Common Circle Methods}, doi = {10.1090/mcom/3869}, journal = {Math. Comp.}, fjournal = {Mathematics of Computation}, pages = {747--784}, volume = {93}, year = {2024}, }

@article{QueBueSte24, author = {Quellmalz, M. and Buecher, L. and Steidl, G.}, title = {Parallelly Sliced Optimal Transport on Spheres and on the Rotation Group}, doi = {10.1007/s10851-024-01206-w}, journal = {J. Math. Imaging Vision}, fjournal = {Journal of Mathematical Imaging and Vision}, number = {6}, pages = {951--976}, pdf = {https://link.springer.com/content/pdf/10.1007/s10851-024-01206-w.pdf}, volume = {66}, year = {2024}, }

@article{AntMelWalSte24, author = {Antarou Ba, F. and Melnyk, O. and Wald, Ch. and Steidl, G.}, title = {Sparse additive function decompositions facing basis transforms}, doi = {10.3934/fods.2024025}, journal = {Found. Data Sci.}, fjournal = {Foundations of Data Science}, number = {4}, pages = {514--552}, volume = {6}, year = {2024}, }

@article{MelQueSteJaiJor24, author = {Melnyk, O. and Quellmalz, M. and Steidl, G. and Jaitner, N. and Jordan, J. and Sack, I.}, title = {Time-harmonic optical flow with applications in elastography}, doi = {10.1088/1361-6420/ad9776}, journal = {Inverse Probl.}, fjournal = {Inverse Problems}, number = {12}, pages = {125026}, pdf = {https://iopscience.iop.org/article/10.1088/1361-6420/ad9776/pdf}, volume = {40}, year = {2024}, }